PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000214642
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 836aa    MW: 95194.7 Da    PI: 7.9895
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000214642genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.4e-2059145390
           FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    Y +Y+ + GF+vrk++ k++ + g + + t+vCsk+g+r++++k+ e+   + +++r+gC+a+++  ++k+gk+++++++  HnH+l 
  MDP0000214642  59 YVKYGAKHGFDVRKHHRKTN-KMGLVSRVTYVCSKQGHRRKDNKRCESITYSLPSSRVGCEAHMVCLLMKTGKFKIISFNASHNHDLI 145
                    99***********9887766.7778********************999999**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1659145IPR004330FAR1 DNA binding domain
PfamPF105512.7E-31267361IPR018289MULE transposase domain
PROSITE profilePS509669.396543581IPR007527Zinc finger, SWIM-type
SMARTSM005758.3E-6556583IPR006564Zinc finger, PMZ-type
PfamPF044345.6E-4557581IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MEKNDSTRLS SESLSGEEVD LQGNGSSLRS NDPDKVEEMT EDLKLGIEFS SHESAYVAYV  60
KYGAKHGFDV RKHHRKTNKM GLVSRVTYVC SKQGHRRKDN KRCESITYSL PSSRVGCEAH  120
MVCLLMKTGK FKIISFNASH NHDLIKAPMK HMLKVNRCLS RAQKGHVADG EKSRSPIKET  180
VELVSREVEG QENLGSGDND YQNYLQRKRK LKMEKGDAGA ILQYFQNMRE DNSSCFYSVQ  240
LDEDDRITNI FWADARSVCD YKAFGDVVCF DTTYQINEYG RPFAPLIGVN HHKQIVVFGA  300
ALLYDDSRDS FKWLFETFLA AMSGKQPKTI LTDQSAATAE AILEVFPEAN HRLCAWHIYQ  360
KAAKNLSHVF HASKQFACDL SKCVYEYEDK DAWLSAWNDM LEKYDLKEDN WLKEIYEVRE  420
KWALVYERHT FTADLMSIQH KESITNVLKK HLMPSHDLLC FFEHFENILA DRRDKELQAD  480
FKMMQTVPSP VINVEMLEHA VEVYTPEVFR LFEKEYMGIL NCSVYKIGKS GTTSEYKVCY  540
RSHEHLVKYD SSTQAVNCSC MKFTFVGILC SHALKVLDKK NVKTIPPDYI LKRWTRGARD  600
RSLTSYHGIE TSDNPKESPG KRYSHLCHNF REIASLAAED ERLTACAHDW SVQLLKSLEE  660
MKKNLGLDNV PVHKNSEGEA LVGESGGTNQ VKMVKHNDCE ITKERGVKRK YTARCPCSRL  720
TEPAETQKHI PPTKGTQSAA RHWLLEGSSV GARTQVSLPS HRFDASATVN LQGTLPFTQR  780
LQGSYVDNGN QASYSSRTFG ATPSFLNNMH FTQLCQEPSR HHNHCSPSKG GKESGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342648.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_008342648.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-123FAR1-related sequence 5