PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000213892 | ||||||||
Common Name | BHLH18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26975.5 Da PI: 7.9966 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.5e-13 | 70 | 116 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr llP + K +Ka+ L k+v+ +k+L MDP0000213892 70 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 116 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.83E-11 | 70 | 119 | No hit | No description |
Pfam | PF00010 | 1.4E-10 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-14 | 71 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-14 | 71 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-12 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.3E-4 | 155 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MQPGNHQSQE LYRFLAQNGL ISVNNDHQLS AMQSFCSSSS NNYSYYPLEL SGVSTEHDAS 60 PQDRALAALK NHKEAEKRRR ERINSHLDKL RGLLPCNSKT DKASLLAKVV QRVKELKQQT 120 SEIAELETFP SETDEITVLS SNDYTNDGRI VFKASLCCED RSDLLPDLIE ILKSLHLKTI 180 KAEIATLGGR IRNVLIVAAD KDHTIESVNF LQNALKSLLE RSNSSERSKR RRVLDGTIVL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 232 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16630 | 0.0 | cell culture| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281284.1 | 1e-176 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 7e-89 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | D9ZIP1 | 1e-174 | D9ZIP1_MALDO; BHLH domain class transcription factor | ||||
STRING | XP_008377601.1 | 1e-175 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 7e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000213892 |
Entrez Gene | 103440683 |
Publications ? help Back to Top | |||
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