PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000213892
Common NameBHLH18
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 240aa    MW: 26975.5 Da    PI: 7.9966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000213892genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-1370116354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +k+L
  MDP0000213892  70 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 116
                    58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44767116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.83E-1170119No hitNo description
PfamPF000101.4E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1471125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-1471127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1273122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4155220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQPGNHQSQE LYRFLAQNGL ISVNNDHQLS AMQSFCSSSS NNYSYYPLEL SGVSTEHDAS  60
PQDRALAALK NHKEAEKRRR ERINSHLDKL RGLLPCNSKT DKASLLAKVV QRVKELKQQT  120
SEIAELETFP SETDEITVLS SNDYTNDGRI VFKASLCCED RSDLLPDLIE ILKSLHLKTI  180
KAEIATLGGR IRNVLIVAAD KDHTIESVNF LQNALKSLLE RSNSSERSKR RRVLDGTIVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.166300.0cell culture| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281284.11e-176transcription factor bHLH106-like
SwissprotO806747e-89BH106_ARATH; Transcription factor bHLH106
TrEMBLD9ZIP11e-174D9ZIP1_MALDO; BHLH domain class transcription factor
STRINGXP_008377601.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.17e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]