PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000212925
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23827.3 Da    PI: 8.0395
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000212925genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.77.1e-141051243
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   +i n+s r+vtf kR+ g +KK +E+  LCd+  + +i+s++
  MDP0000212925 10 FIMNDSSRKVTFRKRKRGFMKKMFEINKLCDVPTCAVIYSPD 51
                   799*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.526149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-21294IPR002100Transcription factor, MADS-box
CDDcd002661.14E-27284No hitNo description
PRINTSPR004047.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-141051IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTRRKVKLAF IMNDSSRKVT FRKRKRGFMK KMFEINKLCD VPTCAVIYSP DEPQPDVWPN  60
PSEARRLIEQ FENMPEEERN KKMVTHXMFL KQMVEKEQQK VNKQKKENRE VEIWLAMNQC  120
LTGKPLTVLE FIDIQEIGWM IDGRLKEVVA IQSRKEDELA KMNQPLGAQP SVTSATIDEN  180
IQNAIQVVPW SIGDVPTPQS GDMDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAFIMNDSSRKVTFRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364016.21e-149agamous-like MADS-box protein AGL80
TrEMBLA0A498IJ481e-100A0A498IJ48_MALDO; Uncharacterized protein
STRINGXP_008364016.11e-149(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-31AGAMOUS-like 80