PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000210939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 829aa    MW: 90733.6 Da    PI: 6.5423
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000210939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.7e-16532570240
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  MDP0000210939 532 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 570
                    689**********************************96 PP
2TCR50.44.3e-16617655139
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                    ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  MDP0000210939 617 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 655
                    589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-17531572IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.967532657IPR005172CRC domain
PfamPF036381.6E-11534569IPR005172CRC domain
SMARTSM011144.4E-17617658IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11619655IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MRWSCLSGNG PPPRGTRSAP PRPNLRLFLN WVFEVVSSVF LKLVNFLRKL TKDFFGFVFP  60
ILVSWVAPAS LHDSPVFNYI NSLSPIKPVK SVHITQTFSS LSFASLPSVF TSPHVSSHKE  120
SRFLRRHNPS DPSKPESSLE SGNKVSVNED AAEFYINAEE LHESCVPXDS VGEASAEPPS  180
EHSKFVIELP RNLKYDCGSP ECDAATSCGT EAGCESEAAA LSAPLVPYAQ KTSENGSSDG  240
EAHLQSICQS GQRREGTGCD WESLISDATD LLIFDSPNAS EAFRGDNAES SGLLGSGEQP  300
ETEDPSSQYG EASQPEDTEL MQDHLNSCMG SNQIEKEDQF NCKPGLNLHR GLRRRCLDFE  360
TAGARRKSLD NVPNFSSSML SQSDEKITTN DKQLVPIKPX GESARCILPG IGLHLNALAT  420
TSKDYKTIKR ENMAYGRQLS LPNLAASAHS PTAGQGPGHE SFSSASSERD MDGTENGVQL  480
LQDASQEPAF LANEEFNQNS PKKKRHVLLT IYSSLXYYVM RKFEQAGETE SSCKRCNCKK  540
SKCLKLYCEC FAAGVYCIEP CSCQECFNKP IHEDTVLATR KQIESRNPLA FAPKVIRTAD  600
PVPEYGEESS KTPASARHKR GCNCKKSSCL KKYCECYQGG VGCSISCRCE GCKNAFGRKD  660
GSFVGTETEA DEEETEACDK SVAEKHQQKN EIQRNEEQRQ DSALPSTPLR LSRQFSLPFS  720
SKNKPPRSST FNIGSSSGLY TITIQKLGKP NILRPESKLE GHNQAVAEDE MPEILQGDGS  780
PSTGIKTASP NGKRVSPPNN EFGPSPGRRA GRKLILQSIP SFPSLTPQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1753665414120Protein lin-54 homolog
5fd3_B6e-1753665414120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00433DAPTransfer from AT4G14770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947657.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A498I9F60.0A0A498I9F6_MALDO; Uncharacterized protein
STRINGXP_008390987.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-151TESMIN/TSO1-like CXC 2