PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000207722
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 370aa    MW: 43270.6 Da    PI: 9.5641
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000207722genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.82.7e-08127173254
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                    ++kGV    ++g W A+I+       + +rf+lg+f +++e a a++  + kl 
  MDP0000207722 127 KFKGVV-PQQNGHWGAQIYA------NhQRFWLGTFKSEKESAMAYDSVAVKLX 173
                    789996.566899****999......44**********99*******9998886 PP
2B388.26.6e-28253347187
                    EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    f+k+ltpsdv+k++rlv+pkk+a e+        + + +e+++l+++d+  r+W+++++y+++s+ + +t+GW++Fvk+n+Lk++D+++F+  ++
  MDP0000207722 253 FQKELTPSDVSKLNRLVIPKKYAVEYfpcicenvEVNGTEDIELVFYDKLMRVWKFRYCYWRSSQXFAFTRGWNRFVKENNLKANDVITFYACES 347
                    99*****************************99955556899*************************************************6543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-17126185No hitNo description
SuperFamilySSF541714.38E-11127184IPR016177DNA-binding domain
SMARTSM003802.4E-11127189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-13127183IPR001471AP2/ERF domain
PROSITE profilePS5103215.567127183IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.2E-31250349IPR015300DNA-binding pseudobarrel domain
CDDcd100177.63E-25252343No hitNo description
SuperFamilySSF1019365.76E-27252347IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.985253358IPR003340B3 DNA binding domain
SMARTSM010198.5E-22253355IPR003340B3 DNA binding domain
PfamPF023625.0E-25253347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRSRVRCSK LVSLIDCSYT QGEIPHSLSG LRNAFQIQTM FMQQQHMQIS NFRFSPSKTL  60
PNLHIHVNIV FIFSLESIHN GRRCXNHHDL KCPKKSGFGN FRFKRNGFSL LHPNKRARHD  120
NGVSFAKFKG VVPQQNGHWG AQIYANHQRF WLGTFKSEKE SAMAYDSVAV KLXNGKDLHI  180
NFPWNSFTVQ ELHFQNHYST DAIMKMIRNG SYLSKFDAFV RSQIQSQIEE MGKGTNNPIR  240
VHGDGQVLCR QLFQKELTPS DVSKLNRLVI PKKYAVEYFP CICENVEVNG TEDIELVFYD  300
KLMRVWKFRY CYWRSSQXFA FTRGWNRFVK ENNLKANDVI TFYACESDDQ VIREEDREST  360
TFWLIEVMDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2924935010108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349427.11e-174PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_009364153.11e-174PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6887e-89RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A498K6E80.0A0A498K6E8_MALDO; Uncharacterized protein
STRINGXP_008352693.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-91RAV family protein