PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000207355
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 1017aa    MW: 116649 Da    PI: 9.4241
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000207355genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.44.2e-27256344290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     Yn+Y+++vGFs+rk++++k+k+++e+t+r f Cskeg+r ++k++  k +++raetrtgC+ak+++k+++ +g++ v+++e++HnH+l+
  MDP0000207355 256 LYNAYGRKVGFSIRKERHYKNKKTNEVTSRIFACSKEGFRLQDKRD-YKIKKPRAETRTGCHAKMVIKLNRsNGRFFVHEFEEQHNHALQ 344
                    7******************************************999.9**********************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-23256344IPR004330FAR1 DNA binding domain
PfamPF105516.3E-32466560IPR018289MULE transposase domain
PROSITE profilePS509669.631747785IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-5758781IPR007527Zinc finger, SWIM-type
SMARTSM005750.0034760787IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1017 aa     Download sequence    Send to blast
MCSPLSMDHT RSNSPSGNEK RPSKAQKPTA SARSFHIHRP PRKQVIRPAD AQQPSSSAST  60
DVTSNPPEHS HIVFVGIIGN QPDEVEKVVV VEPPEPVKRA LHTISQINLA GEQIQGEQRR  120
GLPAGVKNRG RPERKLGSDS SRGRERRRRR EKKKHGNQPR PKPGPVPPEK SKIKRLTNSE  180
KTLSGQRERT PTEERKKVLA HYRIVIDNKC FLDHKIRLKM IDSEEANNIN NDDSNEFDCT  240
PRCGMEFDSQ EAAYNLYNAY GRKVGFSIRK ERHYKNKKTN EVTSRIFACS KEGFRLQDKR  300
DYKIKKPRAE TRTGCHAKMV IKLNRSNGRF FVHEFEEQHN HALQKPECAH MLPSQRKISD  360
SQAAELDLAE ESGISLRESY ELMAKHVGGR ESLGYTRVDQ KNYLLSRRQR KMVYGEAGSL  420
LRYFQGKTVE NPSFFYAVQL DNEEQITNIF WADAKMISDY GHFGDVVSFD TTYKTNRAGR  480
PFAVFSGLNH HREIVVFGAA LMYDETAPSF IWLFETFLXA MSNKAPKTIF TDQDAAMMNA  540
IPHVMPDTYH RLCLWHMMQN ALKNVNCVFK GNSGVREVLK KFIDEYEDED EFLVAWDEML  600
VKHNVQGKAL EWLKGIKKLR KKWAKAYVKM AWSAGMTTTG ISESFNGRLK EYLQSDYNVV  660
QFFMHFERVL DDQRYKEYQA EYNLCYKNAQ VKVPAMMVKQ AGDTYTKAIF EEFQEQYGES  720
LDLRIKSTVD DGEVVVYTVF PPYGAFMERH VRRERDSNII WCSCRLFEIK GILCSHAIKI  780
LREVMDTLEI PSQYILKRWT KKARAESIQD MHGKEIQVDP RLQQSSRFRS LCHAFTQISS  840
RAAESDETYE IALSCAHKLG KLTEDKLSLQ INGKTEDEGE DSAPIMALNH SNDVPNLNNA  900
TVVQAKGLKK RETCRGRRRL KSCLEKAIAK RKRSSNSHLS KETCVPNETV AAGCYIASPP  960
PFFCAPVMAE PRGPFPVGHD MLKYMPWMTY EEPQYSTFQE LLQTSPTGXX VAHQDLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150ERRRRRE
2146151RRRREK
3916932RRRLKSCLEKAIAKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.74411e-142bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166092.10.0protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008351321.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-131FAR1-related sequence 5