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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000206914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 169aa MW: 19493.2 Da PI: 10.5561 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 108 | 161 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ L++ F ++++ e++ L+k lgL+ rqV +WFqNrRa++k MDP0000206914 108 KKRRLTTDQVQFLKKSFDVENKMEPERKVMLTKDLGLQPRQVAIWFQNRRARWK 161 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 93.5 | 2.2e-30 | 108 | 167 | 2 | 61 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk 61 kkrrl+++qv++L +sF+ e+k+eperKv l+++Lglqprqva+WFqnrRAR+ktk+lEk MDP0000206914 108 KKRRLTTDQVQFLKKSFDVENKMEPERKVMLTKDLGLQPRQVAIWFQNRRARWKTKHLEK 167 9**********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-17 | 98 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.92 | 103 | 163 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-16 | 105 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.33E-14 | 106 | 164 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 108 | 161 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 110 | 167 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKEVRFPIFC ILVGVLTVNM AGGRVNDGRN SFVLSALLQN HRSSEPLDSL FLSRSSTSSS 60 AHFLGSRSMV SFEDVRGGRG SNKSLFHQYE HEDNREDDLG EYLHQPGKKR RLTTDQVQFL 120 KKSFDVENKM EPERKVMLTK DLGLQPRQVA IWFQNRRARW KTKHLEKGL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2594 | 1e-163 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008346529.1 | 3e-81 | homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_028947055.1 | 3e-80 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A498HX63 | 2e-79 | A0A498HX63_MALDO; Uncharacterized protein | ||||
TrEMBL | A0A498KPY6 | 2e-79 | A0A498KPY6_MALDO; Uncharacterized protein | ||||
STRING | XP_008356479.1 | 1e-106 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-28 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000206914 |