PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000205622
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 668aa    MW: 74180.8 Da    PI: 5.7441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000205622genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.82.3e-1282986671373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+elL++cA a+s+++ e  ++l+++ +  +s  g p+qRl ay+ e+L ar   s+ ++y+al+++e +     + l+++++++e++P+lkf+++
  MDP0000205622 298 LKELLIACAGALSNNNEESFEKLIEKARGAVSIGGVPIQRLGAYLIEGLVARKEASGANIYHALRCREPE---GNDLLSYMQILYEICPYLKFGYM 390
                    5799*****************************************************************9...99********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    +aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + +++++p+ef+  v     d++
  MDP0000205622 391 AANGAIAEACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKhaRGDGLEAVGRRLKAISDKFNIPVEFHG-VPVFAPDVT 485
                    *****************************************************99988999*************************.688899*** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     ++L+v+pgEalaVn+ lqlh+++desv+ +++rd +L++v+sl+Pkv ++veqe+++n+++F++rf+e+leyy a+f+s++++lpr+s+eri+vE
  MDP0000205622 486 RDMLDVRPGEALAVNFPLQLHHTPDESVDENNPRDGLLRTVRSLNPKVTTLVEQESNTNTTPFFNRFVETLEYYLAMFESIDVTLPRNSKERINVE 581
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +  llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  MDP0000205622 582 MHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFQQYPLSSYVNSVIGGLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 667
                    *******************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.2272649IPR005202Transcription factor GRAS
PfamPF035148.0E-126298667IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MFCCSNIATY GRRQHLTVSF CYIYXGSLAS ASFEDSANSE LPXLDEQVLG PNQNLPRREN  60
TGLFCYLESS QRLPRVSFGE STELDPILHF GFGATGAGLS YTAPLPTVRS LPKRLLGSLK  120
FDIKNSPNTP FSTHFDSDTL TTLSDSQEQH SSPENLSGAT PSCTSSFETN SYVNQLSLSP  180
SVDCSRDSLQ VYSGRTSSLK DANSSQNIKQ TLQELESALM GPDDEEEEVT TPNTSSGESS  240
RQQTQRSMSW IQEHQGSNPV QRQTSFVSRQ RQLAEAQFEK RHKVIDEASL KGLPASNLKE  300
LLIACAGALS NNNEESFEKL IEKARGAVSI GGVPIQRLGA YLIEGLVARK EASGANIYHA  360
LRCREPEGND LLSYMQILYE ICPYLKFGYM AANGAIAEAC RNEDRIHIID FQIAQGTQWV  420
TLLQALAARP SGAPHVRITG IDDPVSKHAR GDGLEAVGRR LKAISDKFNI PVEFHGVPVF  480
APDVTRDMLD VRPGEALAVN FPLQLHHTPD ESVDENNPRD GLLRTVRSLN PKVTTLVEQE  540
SNTNTTPFFN RFVETLEYYL AMFESIDVTL PRNSKERINV EMHCLARDIV NVIACEGKER  600
VERHELFGKW KSRLTMAGFQ QYPLSSYVNS VIGGLLRCYS EHYTLVEKDG AMLLGWKDRN  660
LISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5930566725377Protein SCARECROW
5b3h_D2e-5930566725377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159320.0bud| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365835.20.0LOW QUALITY PROTEIN: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A498K7Y70.0A0A498K7Y7_MALDO; Uncharacterized protein
STRINGXP_008365835.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-169GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]