PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000202128

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 521aa MW: 57407.5 Da PI: 7.8558

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000202128	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	160.1	3.4e-50	23	117	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqd++lPianv+rimk++lP nakisk+aket+qec+sefisfvt+eas+kc++e+rkt+ngdd++wal lGf+dy pl+ yl++yre e++ MDP0000202128 23 KEQDQLLPIANVGRIMKQILPPNAKISKEAKETMQECASEFISFVTGEASEKCRKERRKTVNGDDVCWALRALGFDDYTGPLRRYLHRYREQERD 117 89*******************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-47	21	119	IPR009072	Histone-fold
SuperFamily	SSF47113	7.76E-37	25	140	IPR009072	Histone-fold
Pfam	PF00808	5.3E-26	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-14	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.4E-14	75	93	No hit	No description
PRINTS	PR00615	4.4E-14	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MVDNNNPGAS GAAKDDDIDG GIKEQDQLLP IANVGRIMKQ ILPPNAKISK EAKETMQECA 60 SEFISFVTGE ASEKCRKERR KTVNGDDVCW ALRALGFDDY TGPLRRYLHR YREQERDGIS 120 SEANNNINED HQRISINNIP HTXGSNYFKG SSTSGYLMGY VDGTLLCPPK HVANSTTVNP 180 XYTAWVQQDQ MILSWINGSL XASVLSVVAS KEQLELHGKL LSKGATVNAF XASRGRGGXP 240 RGGXRGHASN RGGNQRAYNN RNNTNIPNNQ GHPXLDCYQR MNAAFEGRIP TKXLSXMTSS 300 PITLNKQQNG SWLLDTGANA HITPDIQNLA HXKEYNGNDG XGGVGKSTKL PFNVSESMSQ 360 FXLQLIHSDV WXSPIQSNEG SLDHQGYRCL DMSTRRVYLS HHVLFDDDFF PFKGLTSPSE 420 SVASLVTNLL PDLLFTFPLS TASPESPILN XPPPQISPNS NLYASIPSYP DPTTSQPNTL 480 PTXLTNFLLS LRVSIRQSSI RSGGMIWCRN SMPYNGVEPR V

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MVDNNNPGAS GAAKDDDIDG GIKEQDQLLP IANVGRIMKQ ILPPNAKISK EAKETMQECA  60
SEFISFVTGE ASEKCRKERR KTVNGDDVCW ALRALGFDDY TGPLRRYLHR YREQERDGIS  120
SEANNNINED HQRISINNIP HTXGSNYFKG SSTSGYLMGY VDGTLLCPPK HVANSTTVNP  180
XYTAWVQQDQ MILSWINGSL XASVLSVVAS KEQLELHGKL LSKGATVNAF XASRGRGGXP  240
RGGXRGHASN RGGNQRAYNN RNNTNIPNNQ GHPXLDCYQR MNAAFEGRIP TKXLSXMTSS  300
PITLNKQQNG SWLLDTGANA HITPDIQNLA HXKEYNGNDG XGGVGKSTKL PFNVSESMSQ  360
FXLQLIHSDV WXSPIQSNEG SLDHQGYRCL DMSTRRVYLS HHVLFDDDFF PFKGLTSPSE  420
SVASLVTNLL PDLLFTFPLS TASPESPILN XPPPQISPNS NLYASIPSYP DPTTSQPNTL  480
PTXLTNFLLS LRVSIRQSSI RSGGMIWCRN SMPYNGVEPR V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-39	22	113	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	4e-49	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	MDP0000202128