PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000200915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 654aa MW: 72026.5 Da PI: 6.6194 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.9 | 3.1e-07 | 268 | 288 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f++ GtC++Gd C +aHg MDP0000200915 268 PCLDFRK-GTCRRGDLCEYAHG 288 6999***.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 6.1E-19 | 10 | 160 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.04E-18 | 54 | 161 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 19.147 | 55 | 162 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.69E-17 | 55 | 159 | No hit | No description |
Pfam | PF12796 | 3.4E-10 | 55 | 124 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0023 | 55 | 85 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.888 | 90 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0012 | 90 | 122 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 12.652 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 268 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 296 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 77 | 298 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MAFVFEAEHS FSSLLELAAD NDVKGFKQSI SDPAVVNEIG LWYGRHSASR RMVLEYRTPL 60 MVASKYGSVD VVKLILSLSK ADVNFSLGPD KTTALHCAVS GGSEKAVETV KVLLQAGADP 120 NATDANGCFP LDVIVAPLNC SNLKVVLQEL LQYGGSVHAL SVSFGFSSPF LSTTPTNNSL 180 XSSIPDSTCN TYDIHGSSTP EKKEHPFDLS LPNIKDXIYA TDEFRMFSFK IRPCSRAYSH 240 DWTECPFVHP GENARRRDPR KFQYSCMPCL DFRKGTCRRG DLCEYAHGVF ECWLHPAQYK 300 TRLCKDGMSC LRQVCFFAHK PEEMRPLYVS TGSAMPSPHS ATSAAAFMDM AATLNVLPGS 360 TKAVEAMSPP FTPPMSLHDG IFDSSMAWPQ QYIPGLYLPG SNIQASRLRS SFNANNVPTE 420 EVNMLHNFEM EQQQSFHDGS SFSHSYISAS SMSHPRRQET LTPSNLNDVF ASHLSSPRFA 480 DQLANSSAFS SSKISIVRNQ LHQQQSMLSP IRTNVFSPRX VDQNLLQVPF GLSSLRMMSP 540 RSMEPLSPIG TRVSTLAQQE KQKPLYSPNS CDAGSNGVGS PMSMSKWESS SAKLDWSVQT 600 DEPGHLSKLS YTEHNVNEPD VSWIQSLVKE SPSDAKEITS VPESGTLLPI ECSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017183230.2 | 0.0 | zinc finger CCCH domain-containing protein 56-like, partial | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A498K4S3 | 0.0 | A0A498K4S3_MALDO; Uncharacterized protein | ||||
STRING | XP_008363574.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20445 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | MDP0000200915 |