PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000200272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 79aa MW: 9154.4 Da PI: 10.0034 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.9 | 1.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvt+skRrng+lKKA+E SvLCdaevaviifs++++lye+ss MDP0000200272 9 KRIENATSRQVTLSKRRNGLLKKAYEFSVLCDAEVAVIIFSQKDRLYEFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.081 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-29 | 3 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.44E-35 | 3 | 74 | No hit | No description |
Pfam | PF00319 | 9.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MVRGKIAMKR IENATSRQVT LSKRRNGLLK KAYEFSVLCD AEVAVIIFSQ KDRLYEFSSS 60 DYMXNTISLI LAYSFYNLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-18 | 1 | 77 | 1 | 73 | MEF2C |
5f28_B | 5e-18 | 1 | 77 | 1 | 73 | MEF2C |
5f28_C | 5e-18 | 1 | 77 | 1 | 73 | MEF2C |
5f28_D | 5e-18 | 1 | 77 | 1 | 73 | MEF2C |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164011 | 2e-75 | KP164011.1 Pyrus pyrifolia clone PpSOC1-2 SOC1-like MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959420.1 | 1e-37 | MADS-box protein AGL42-like | ||||
Swissprot | Q9FIS1 | 2e-31 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A498KJV6 | 5e-34 | A0A498KJV6_MALDO; Uncharacterized protein | ||||
STRING | XP_009341300.1 | 2e-34 | (Pyrus x bretschneideri) | ||||
STRING | XP_008343717.1 | 1e-33 | (Malus domestica) | ||||
STRING | XP_008376883.1 | 4e-33 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.4 | 9e-34 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000200272 |