PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000200105

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 928aa MW: 105816 Da PI: 6.9724

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000200105	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.3	4.1e-31	86	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka++ vk++++g+w+v+ +++eHnHel+p MDP0000200105 86 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASFSVKMQDSGRWVVSGFVKEHNHELVP 177 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-29	86	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-32	298	390	IPR018289	MULE transposase domain
Pfam	PF04434	6.0E-12	566	612	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.338	578	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MDNEVIEFDI GLGGGGGRDG DDDFVDIEHP VDDEEMVDSP LMGSATGSGS GIVFGGGEIY 60 LPEGDLLDLE PYDGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA 120 KEGFRNLNEK RTKDREIKRP RTITRVGCKA SFSVKMQDSG RWVVSGFVKE HNHELVPPDQ 180 VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR 240 QKSLDGDIQM LLDYLRQMQA DNQNFFYAVR GDDDKSMGNV IWADPKARIN YSYFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC AFLINESEAS FVWLFKTWLM AMSGCPPVSI 360 TTDHDPVIQS AIKQVFPQTR HRFCKWHVFK KCQEKLSHVF LKHPTFEADF HKCVNLTESI 420 EEFESYWLSL VDKYSLRDHE WIQMVYSARR QWVPVYLRDT FFAEMSITQR SDSMNSYFDG 480 YVNASTNLSQ FFKLYEKALE SRNEKEVKAD FETMNTAPVL KTPSPMEKQV SELYTKKIFM 540 RFQEELVGTL TFTASKGDDD GEIITYQVAK FGEDHKAYYV KLNVLEMMAT CSCQMFEFSG 600 LLCRHVLAVF RVTNVLTLPS HYILKRWTRN AKSNVMLEER SSDVYTNYLE SHTVRYNTLR 660 HEAFKFVDGA RSSETYDIAV EALKEAAKKV AHAIKNEGKA MLNGHVRGSL AGGASRAARC 720 ASGDHEGSSG QHLSEDDMDK KIRELTNELE CAKRKCEVYR ANLRSVLKDI EDHKLQLSIK 780 GPYCRLWILA VDLTRDRLDT SHGCTRRQIS ELKGSSGYGN ALSKAFAVPF CFGSDLHVYT 840 VSFVKLIWSL LIIWYCADCQ LSPFFRIESS TVQYDTETES LSSGGWESED GMLCSSILKT 900 TKCYSNRVRA LLEEPRGGSN NVRWENFW

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MDNEVIEFDI GLGGGGGRDG DDDFVDIEHP VDDEEMVDSP LMGSATGSGS GIVFGGGEIY  60
LPEGDLLDLE PYDGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA  120
KEGFRNLNEK RTKDREIKRP RTITRVGCKA SFSVKMQDSG RWVVSGFVKE HNHELVPPDQ  180
VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR  240
QKSLDGDIQM LLDYLRQMQA DNQNFFYAVR GDDDKSMGNV IWADPKARIN YSYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC AFLINESEAS FVWLFKTWLM AMSGCPPVSI  360
TTDHDPVIQS AIKQVFPQTR HRFCKWHVFK KCQEKLSHVF LKHPTFEADF HKCVNLTESI  420
EEFESYWLSL VDKYSLRDHE WIQMVYSARR QWVPVYLRDT FFAEMSITQR SDSMNSYFDG  480
YVNASTNLSQ FFKLYEKALE SRNEKEVKAD FETMNTAPVL KTPSPMEKQV SELYTKKIFM  540
RFQEELVGTL TFTASKGDDD GEIITYQVAK FGEDHKAYYV KLNVLEMMAT CSCQMFEFSG  600
LLCRHVLAVF RVTNVLTLPS HYILKRWTRN AKSNVMLEER SSDVYTNYLE SHTVRYNTLR  660
HEAFKFVDGA RSSETYDIAV EALKEAAKKV AHAIKNEGKA MLNGHVRGSL AGGASRAARC  720
ASGDHEGSSG QHLSEDDMDK KIRELTNELE CAKRKCEVYR ANLRSVLKDI EDHKLQLSIK  780
GPYCRLWILA VDLTRDRLDT SHGCTRRQIS ELKGSSGYGN ALSKAFAVPF CFGSDLHVYT  840
VSFVKLIWSL LIIWYCADCQ LSPFFRIESS TVQYDTETES LSSGGWESED GMLCSSILKT  900
TKCYSNRVRA LLEEPRGGSN NVRWENFW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008382517.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5VLX0	0.0	M5VLX0_PRUPE; Uncharacterized protein
STRING	XP_008382516.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000200105

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]