PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000198333

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 355aa MW: 40342 Da PI: 8.8493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000198333	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	40	86	18	55
HHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.as........kapskKlsKaeiLekAveYIksLq 55 +af++L ++ P+ + ++ ++l+K++iL+ ++ I+ Lq MDP0000198333 40 TAFQKLASVFPPiXChxfflqdyNTLYPRLNKVDILTDVICRISALQ 86 7999*****9888999999999**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.50.140	6.2E-10	137	258	IPR012340	Nucleic acid-binding, OB-fold
Pfam	PF08646	1.0E-8	137	250	IPR013955	Replication factor A, C-terminal
SuperFamily	SSF50249	2.06E-15	138	241	IPR012340	Nucleic acid-binding, OB-fold

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MASKIEVGAC YEITEFRTAK IKGQYRVVPH ETQVLFTSKT AFQKLASVFP PIXCHXFFLQ 60 DYNTLYPRLN KVDILTDVIC RISALQQVEP KQINQRVVYK CDVVIQNIRF CDCKEPLEIP 120 SLYAIQGNEA QILQTAKKIC ISACPNCVKQ MHKDPTTGQL ICQKHPKPNS NTVVMYKVNL 180 ILEDETNEMN ALIIGKCGEK LFGMSCKDLV LNQRSVEQQQ LPKEFLRLIG QKKXFHLRFG 240 NKRNTFNSND ILIHNVTEDT TMHPATPQPL SREIAVSSTT ISSSTSTVEP NEQSFKRKRE 300 SIRRALFTCG EQSCLTDMDP RELDEIPIKL LKRKSSPTAG KSDTTLPKKS EVVIF

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MASKIEVGAC YEITEFRTAK IKGQYRVVPH ETQVLFTSKT AFQKLASVFP PIXCHXFFLQ  60
DYNTLYPRLN KVDILTDVIC RISALQQVEP KQINQRVVYK CDVVIQNIRF CDCKEPLEIP  120
SLYAIQGNEA QILQTAKKIC ISACPNCVKQ MHKDPTTGQL ICQKHPKPNS NTVVMYKVNL  180
ILEDETNEMN ALIIGKCGEK LFGMSCKDLV LNQRSVEQQQ LPKEFLRLIG QKKXFHLRFG  240
NKRNTFNSND ILIHNVTEDT TMHPATPQPL SREIAVSSTT ISSSTSTVEP NEQSFKRKRE  300
SIRRALFTCG EQSCLTDMDP RELDEIPIKL LKRKSSPTAG KSDTTLPKKS EVVIF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028963181.1	1e-122	uncharacterized protein LOC103428936 isoform X2
TrEMBL	A0A498JXX2	1e-124	A0A498JXX2_MALDO; Uncharacterized protein
STRING	XP_008372981.1	6e-87	(Malus domestica)

Link Out ? help Back to Top
Phytozome	MDP0000198333