PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000197526

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 247aa MW: 27026.2 Da PI: 6.7805

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000197526	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.6	3.3e-41	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk++rrkC+++Cv+apyfp +qp+kfanvh ++Gasnv k+l++l+ reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l MDP0000197526 8 PCAACKFQRRKCTQECVFAPYFPPDQPQKFANVHTVYGASNVGKILNELNVAYREDAVTSLAYEAEARLRDPVYGCVGFISFLQNRLKQVQTDLYN 103 7********************************************************************************************988 PP DUF260 97 lke 99 +k+ MDP0000197526 104 AKK 106 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.982	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-40	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSSNTHSPCA ACKFQRRKCT QECVFAPYFP PDQPQKFANV HTVYGASNVG KILNELNVAY 60 REDAVTSLAY EAEARLRDPV YGCVGFISFL QNRLKQVQTD LYNAKKDLYA YVGPQALMIP 120 LLGATTGPPP QQGCRGGQLL IRDQHQQQLF EAHQQELVRF NINGMDAAAS LVNGNGFSQI 180 PAAAASTGVV SGSLGLGGAF DNNHYNQIQQ EAAAHHQNSL DHQLQARLML QPHPAQESQQ 240 KSEGEES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-45	7	111	10	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-45	7	111	10	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028964806.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	4e-61	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A498IUH3	0.0	A0A498IUH3_MALDO; Uncharacterized protein
STRING	XP_009377477.1	1e-172	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-61	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	MDP0000197526

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]