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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000195608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 27528.5 Da PI: 9.7117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.9 | 4.7e-05 | 82 | 127 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ ++++ L ++l ++++K i++++ I++L MDP0000195608 82 RHMINERMRREKQKQSYLALHSMLSAG-----TRNDKNLIVQMTAMNIQQL 127 5889*******************9876.....89**********9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.52E-8 | 75 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.055 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDRYILKALE GEFLWYDESX PVLLNQSAFV PYTNRPISNQ LPNGVXKSMN VNKRMLQFLR 60 KSWQPAAARN EAGEDGRERG XRHMINERMR REKQKQSYLA LHSMLSAGTR NDKNLIVQMT 120 AMNIQQLKRY EEELRKKNME LETLLVENEK ERVKWTKIRL KVANPTSGID STLEVLKCLQ 180 HLGLKARNIR SNFSLEEFSA ELEIESKXGA AEIEESVQET LYEAERKLHF PFPAGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346437.1 | 1e-148 | PREDICTED: transcription factor bHLH92-like | ||||
TrEMBL | A0A498I7U9 | 1e-154 | A0A498I7U9_MALDO; Uncharacterized protein | ||||
STRING | XP_008391054.1 | 1e-170 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000195608 |