PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000195579
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 292aa    MW: 31728.3 Da    PI: 7.089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000195579genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09175222455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MDP0000195579 175 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 222
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17169240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-9169226No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17171239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7175222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDPPTLVNQC SFPNANATSF DLPEIWQFAM NGSGASAGDS VGALGLRRPN FSQSFAQFGD  60
VSGSIRDVLA DSDPNTMSLD HLGNHGGGHG GASRKRRDAN ADAESPKSSG NIGARDCDGK  120
RLKASTRCRD ESARESKAEA ETSSCKPAEQ NAQPPDPPKQ DYIHVRARRG QATDSHSLAE  180
RARREKISER MKILQDLVPG CNKVIGKALV LDEIINYVQS LQRQVEFLSM KLEAVNTRMN  240
PGIEAFPCKE FGQQTFDAAS MAFGTQLPRE YSRGNSPEWL HMQVGGGFDR AT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.7310.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389558.10.0transcription factor BHLH089-like
SwissprotQ84T084e-77BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A498IC900.0A0A498IC90_MALDO; Uncharacterized protein
STRINGXP_008389558.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-93BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]