PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000193056

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB

Protein Properties

Length: 289aa MW: 32701.6 Da PI: 4.9128

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000193056	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.8	1.6e-20	37	83	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+eEd +l+d+v+++G g+W++ ar+ g++Rt+k+c++rw++yl MDP0000193056 37 GPWTAEEDSILIDYVNLHGEGRWNSLARHAGLKRTGKSCRLRWLNYL 83 89*******************************************97 PP
2	Myb_DNA-binding	40	8.9e-13	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+++++ ++ +G++ W++Ia+ ++ gRt++++k++w++ MDP0000193056 89 RGNITLQEQLIILXLHSCWGNR-WSKIAEXLP-GRTDNEIKNYWRT 132 7899****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.744	31	87	IPR017930	Myb domain
SuperFamily	SSF46689	7.03E-30	33	130	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-17	35	85	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-18	36	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-24	37	90	IPR009057	Homeodomain-like
CDD	cd00167	5.41E-14	38	83	No hit	No description
PROSITE profile	PS51294	16.26	88	138	IPR017930	Myb domain
SMART	SM00717	1.3E-10	88	136	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-11	89	132	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-20	91	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDTSNVHDQM KSAGYGSLAA AAAPDQPIEE GLGLRTGPWT AEEDSILIDY VNLHGEGRWN 60 SLARHAGLKR TGKSCRLRWL NYLRPSVRRG NITLQEQLII LXLHSCWGNR WSKIAEXLPG 120 RTDNEIKNYW RTRVQKQAKQ LKCDVNSKQF QDAMRYVWIP RXIERIGGLP ESLPDQPRTC 180 TTTXSEXEYW VDTNFVPKTS GXTSSDSYDQ VQACSIPTDR TSSGDEFMTY PCSGQYGSEN 240 GSGYSQNGIN SDIHDFEQID YCSTGGDTSV ENLWNEENIW FLQQQLSDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-25	34	138	5	108	B-MYB
1h8a_C	4e-25	34	138	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008348686.3	0.0	transcription factor MYB108-like
TrEMBL	A0A498J6E0	0.0	A0A498J6E0_MALDO; Uncharacterized protein
STRING	XP_008348686.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47190.1	2e-74	myb domain protein 2

Link Out ? help Back to Top
Phytozome	MDP0000193056