PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000192617
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 403aa    MW: 44368.2 Da    PI: 5.0263
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000192617genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.55.8e-16209245135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MDP0000192617 209 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 245
                    *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.7E-669104IPR010399Tify domain
PROSITE profilePS5132012.60969104IPR010399Tify domain
PfamPF062003.0E-972103IPR010399Tify domain
PROSITE profilePS5101712.58137179IPR010402CCT domain
PfamPF062031.2E-14137178IPR010402CCT domain
SMARTSM004011.1E-9203256IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.55203260IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-11207254No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14207250IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.89E-15208251No hitNo description
PfamPF003208.2E-14209245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAAVNPQPLQ ARPIEERGRG PIQVEDDDGD YEDGGDDGME DMEEVHVNSV SVEKCAGGGG  60
GGGGGGVVMA SRTSELTLSF EGEVYVFPAV TPEKVQXVLL LLGGRDVPTG MPTVEVSSDQ  120
NTRGVGDTPK RSNLSRRIAS LVRFREKRKE RCFDKKIRYT VRKEVAQRML RKNGQFASLK  180
QTSGASSWES TQSFLQDGTP QPETVLRRCQ HCGVSENNTP AMRRGPAGPR TLCNACGLMW  240
ANKGTLRDLS KSGRNLTVDH IEPGTLGRLS KKVDEGSNDA SVNPDEEDSQ ETAEDLTNSF  300
PMGIVSPAND EQVCLDHQIN LQPTDDDWYQ INLYPNGVLN GIILITYYNP HDKCCVDVIY  360
TTPESFPQAI PCADSTVQGE KCEVKKRALD HYVRRRYNNH ETL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131DTPKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.139190.0cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028949526.10.0GATA transcription factor 24-like isoform X2
TrEMBLA0A498HUB40.0A0A498HUB4_MALDO; Uncharacterized protein
STRINGXP_008219237.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-73ZIM-like 1