PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000191541

Common Name

HSF1

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HSF

Protein Properties

Length: 414aa MW: 46878.8 Da PI: 4.5486

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000191541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.3	5.7e-34	22	113	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k ye+++d++ +++iswse g+sf++ld+ +f+ ++LpkyFkhsnf+SF+RQLn+YgF+k++ ++ w F+++ F +g+k+ll++i MDP0000191541 22 FLRKCYEMVDDKDSDSIISWSEAGDSFAILDMAQFSISMLPKYFKHSNFSSFMRQLNIYGFRKIDPDR---------WVFANEGFIRGQKHLLKNI 108 9**************************************************************999.........*************** PP XXXXX CS HSF_DNA-bind 98 krkks 102 r+k+ MDP0000191541 109 ARRKH 113 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.8E-35	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.1E-51	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.52E-33	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-29	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-18	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-18	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-18	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MVKSAEKGGG DGSGPSGSVP PFLRKCYEMV DDKDSDSIIS WSEAGDSFAI LDMAQFSISM 60 LPKYFKHSNF SSFMRQLNIY GFRKIDPDRW VFANEGFIRG QKHLLKNIAR RKHPQGTDQK 120 KILQQKDNPD IPSENISENG LWKEVENLKT DKVALKQELV KLRQHQEISQ NKLLLLRNRL 180 RGMEKNQQQM LSFLVMAMQS PGFLVQLLHP KENSWRIAEA GNIIEQCMDD DRPVASDGAI 240 VRYQPPMIEA PKPLVPPNSG SEKQPEVDAY MDGMEDFVVN PDFMKMLMDE KLSPVETHAP 300 YTLPDISDDG AWEQFLLASP FLENIEGTKE DGEEPADARM EVEPIVSDLD ESQNFDYLVE 360 QMKKSQNFAS DSTVDGSNME SSQNLEFITE QMGHLASDSN NMEQNQGSRR TTSV

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MVKSAEKGGG DGSGPSGSVP PFLRKCYEMV DDKDSDSIIS WSEAGDSFAI LDMAQFSISM  60
LPKYFKHSNF SSFMRQLNIY GFRKIDPDRW VFANEGFIRG QKHLLKNIAR RKHPQGTDQK  120
KILQQKDNPD IPSENISENG LWKEVENLKT DKVALKQELV KLRQHQEISQ NKLLLLRNRL  180
RGMEKNQQQM LSFLVMAMQS PGFLVQLLHP KENSWRIAEA GNIIEQCMDD DRPVASDGAI  240
VRYQPPMIEA PKPLVPPNSG SEKQPEVDAY MDGMEDFVVN PDFMKMLMDE KLSPVETHAP  300
YTLPDISDDG AWEQFLLASP FLENIEGTKE DGEEPADARM EVEPIVSDLD ESQNFDYLVE  360
QMKKSQNFAS DSTVDGSNME SSQNLEFITE QMGHLASDSN NMEQNQGSRR TTSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-26	9	111	17	129	Heat shock factor protein 1
5d5v_B	2e-26	9	111	17	129	Heat shock factor protein 1
5d5v_D	2e-26	9	111	17	129	Heat shock factor protein 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2357	0.0	fruit\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001281294.1	0.0	heat shock factor protein 1
TrEMBL	D9ZJ25	0.0	D9ZJ25_MALDO; HSF domain class transcription factor
STRING	XP_008381767.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10419	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	2e-91	heat shock transcription factor A8

Link Out ? help Back to Top
Phytozome	MDP0000191541
Entrez Gene	103444590