PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000190269

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 493aa MW: 56195.1 Da PI: 10.4684

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000190269	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.5	1.9e-17	309	394	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y ++vGF +r+++ +k+ ++g++++r fvCs +g+r ++k++ + ++++++tr gC+ +l+++ gk+ + +++ eH+H MDP0000190269 309 NFYMTYVYHVGFGIRRNNAHKR-EDGTFKDRLFVCSAQGYRGPDKHD-ANVQHHHTKTRFGCQSRLQINSPIPGKYLMVDFVAEHTHG 394 6*************998876.9999*************999.88999999*****************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	309	394	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MGSHQLRWSS FVPRTITCTS TRRNRCQSCT RTRAARSTWC RRGSRVRCRA RLSGRSGRKP 60 LNSCTITRMP PWRTGSGRSS RVTIRCPRYR TSSCTSRSLI DFDRVLRTTV NIYETAHRTA 120 TGDRKSVCVS LGPTTLSHAS PDFLHPNTLW SFRGPSKYAT RVHPLTNLNS VIFSVILKLL 180 LSTKFLEKEI AKGIRRLDST KYPSIARLSF FLAVASKVLR FHVQALNHGA KKIICIKIWT 240 SLEYQTEAHR KLDFEGDISM NNFVEGECSD KKLEDTTDGE NIVLIHSKIQ KEFIPTVGLE 300 FETEVQAYNF YMTYVYHVGF GIRRNNAHKR EDGTFKDRLF VCSAQGYRGP DKHDANVQHH 360 HTKTRFGCQS RLQINSPIPG KYLMVDFVAE HTHGTTSPSK THFFRAHKNI SVARKTLADM 420 ADSSGIDPKA TIEFFSRQAG GRENLGFIPE DYRNYLCSKR TTEMKIGDTS GVLEYLQKNT 480 IERSQYFLCN TSG

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MGSHQLRWSS FVPRTITCTS TRRNRCQSCT RTRAARSTWC RRGSRVRCRA RLSGRSGRKP  60
LNSCTITRMP PWRTGSGRSS RVTIRCPRYR TSSCTSRSLI DFDRVLRTTV NIYETAHRTA  120
TGDRKSVCVS LGPTTLSHAS PDFLHPNTLW SFRGPSKYAT RVHPLTNLNS VIFSVILKLL  180
LSTKFLEKEI AKGIRRLDST KYPSIARLSF FLAVASKVLR FHVQALNHGA KKIICIKIWT  240
SLEYQTEAHR KLDFEGDISM NNFVEGECSD KKLEDTTDGE NIVLIHSKIQ KEFIPTVGLE  300
FETEVQAYNF YMTYVYHVGF GIRRNNAHKR EDGTFKDRLF VCSAQGYRGP DKHDANVQHH  360
HTKTRFGCQS RLQINSPIPG KYLMVDFVAE HTHGTTSPSK THFFRAHKNI SVARKTLADM  420
ADSSGIDPKA TIEFFSRQAG GRENLGFIPE DYRNYLCSKR TTEMKIGDTS GVLEYLQKNT  480
IERSQYFLCN TSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-26	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000190269