PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000185981

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 227aa MW: 25537.2 Da PI: 4.7277

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000185981	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.5	1.2e-18	63	148	11	99
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ l++p+kf++++ +++++ l+l+ +s sW+v++ +k++++ + + +GW+eF k+n L gDf+vF++dg+++f + +f++ MDP0000185981 63 FNTEKLTVPRKFLTHIlkELSER--ASLKLKGSSDYSWTVNV--TKTPKGaVRFNGGWQEFLKDNSLGHGDFLVFTYDGKMQF--SIDIFDN 148 56778******8888766644..57***********..888777799***********************99999..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-23	48	151	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-21	50	151	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.324	53	149	IPR003340	B3 DNA binding domain
CDD	cd10017	6.91E-17	53	147	No hit	No description
SMART	SM01019	1.6E-11	55	149	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.9E-16	63	148	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSRKIERSSD SHSYVSQAYV CILSCSMSFP LQSIAIGSTT EKMARMPKEE KKPTFFQIIC 60 KGFNTEKLTV PRKFLTHILK ELSERASLKL KGSSDYSWTV NVTKTPKGAV RFNGGWQEFL 120 KDNSLGHGDF LVFTYDGKMQ FSIDIFDNTA CHRIDDKINP NSNSSSGDAS VQNLSSSESS 180 EFDESIEEEE DDSCKDSEAT CEDNISEDSE ATRTESFKSN FPHYNDT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008362156.1	1e-135	B3 domain-containing protein REM20-like
Refseq	XP_008362164.1	1e-135	B3 domain-containing protein REM20-like
TrEMBL	A0A498JV41	1e-134	A0A498JV41_MALDO; Uncharacterized protein
STRING	XP_008362156.1	1e-135	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14202	8	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34400.1	8e-14	B3 family protein

Link Out ? help Back to Top
Phytozome	MDP0000185981