PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000185853
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 315aa    MW: 35240.6 Da    PI: 6.6403
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000185853genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-141252343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n++ r+  f kR++ + KKA ELS LCd++va++++  +
  MDP0000185853 12 IPNETARKMAFRKRKKSVYKKADELSKLCDIDVALVVYEAD 52
                   889**********************************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.521254IPR002100Transcription factor, MADS-box
CDDcd001205.14E-14349No hitNo description
PRINTSPR004049.0E-6424IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-4462IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-14782IPR002100Transcription factor, MADS-box
PfamPF003193.8E-141253IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-62439IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-63960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVAPTRRSLE LIPNETARKM AFRKRKKSVY KKADELSKLC DIDVALVVYE ADQRKGIRPV  60
QPETWPQDPV EFNRILGRYK ASKDAAAPGF LKRSFSLSDF YEAKMKKDAD GDDGDHSDGD  120
DGGDDGDGDD GDDDDHVDPK LQKLGNKHIS ENKYPTWDAR IDLFSEDELI KLIASLEAKI  180
QASTLKIDSM ERYHAVKQNQ NLSRTHSSSS KTLQRLNPAY FDVQMPPSQD PVNPFIHNAL  240
GQKVTHELAQ WGGFNKNPVN STTTSTTTSV MESKNPMNTT STTSTSAMEL KPPLLVKCPM  300
LPSAWILNSE LQKKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962266.10.0agamous-like MADS-box protein AGL82
TrEMBLA0A498HTF11e-115A0A498HTF1_MALDO; Uncharacterized protein
TrEMBLA0A498JAV81e-115A0A498JAV8_MALDO; Uncharacterized protein
STRINGXP_009355438.11e-157(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-14M-type_MADS family protein