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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000185853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 315aa MW: 35240.6 Da PI: 6.6403 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.8 | 3.2e-14 | 12 | 52 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n++ r+ f kR++ + KKA ELS LCd++va++++ + MDP0000185853 12 IPNETARKMAFRKRKKSVYKKADELSKLCDIDVALVVYEAD 52 889**********************************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.521 | 2 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.14E-14 | 3 | 49 | No hit | No description |
PRINTS | PR00404 | 9.0E-6 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-4 | 4 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-14 | 7 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-14 | 12 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-6 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-6 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MVAPTRRSLE LIPNETARKM AFRKRKKSVY KKADELSKLC DIDVALVVYE ADQRKGIRPV 60 QPETWPQDPV EFNRILGRYK ASKDAAAPGF LKRSFSLSDF YEAKMKKDAD GDDGDHSDGD 120 DGGDDGDGDD GDDDDHVDPK LQKLGNKHIS ENKYPTWDAR IDLFSEDELI KLIASLEAKI 180 QASTLKIDSM ERYHAVKQNQ NLSRTHSSSS KTLQRLNPAY FDVQMPPSQD PVNPFIHNAL 240 GQKVTHELAQ WGGFNKNPVN STTTSTTTSV MESKNPMNTT STTSTSAMEL KPPLLVKCPM 300 LPSAWILNSE LQKKI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028962266.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A498HTF1 | 1e-115 | A0A498HTF1_MALDO; Uncharacterized protein | ||||
TrEMBL | A0A498JAV8 | 1e-115 | A0A498JAV8_MALDO; Uncharacterized protein | ||||
STRING | XP_009355438.1 | 1e-157 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14708 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-14 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000185853 |