PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000185553
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 661aa    MW: 71732.2 Da    PI: 9.2721
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000185553genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.51e-21304366163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+e kr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++ e+++l se+
  MDP0000185553 304 EREMKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENNTLRSEVNQIRSEYEQLLSEN 366
                    799*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.3E-53137271No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-16299363No hitNo description
SMARTSM003381.1E-21304368IPR004827Basic-leucine zipper domain
PfamPF001702.2E-20304366IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.38306369IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-11307363No hitNo description
CDDcd147026.38E-23309359No hitNo description
PROSITE patternPS000360311326IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MGSREMDKPA KEKEKETKTT PATTQEQPAT TSTGTVNPDW SGFQAYSPIP PHGFMASSPQ  60
AHPYMWGVQH IMPPYGTPPH PYVAMYPHGG LYAHPSMPPG SYPFSPFAMP TPNGIVEASG  120
NTPGSMEADG KPSEVKEKLP IKRSKGSLGS LNMITGKNNE LGKTSGASAN GVYSKSAESA  180
SDGTSEGSDA NSQSDSQLKS GGRQDSLEGD VSQNGSSAHG SQNGAPHTML NQTMAIMPLT  240
AAGAPGAVSG PATNLNIGMD YWGAPPSAAM PAMRGKIPTT PVSAGIVTAG SRDSVQSQIR  300
LQDEREMKRQ RRKQSNRESA RRSRLRKQAE CDELAQRAEV LKEENNTLRS EVNQIRSEYE  360
QLLSENASLK QVTIQSDTDF PVLTXTLGRG LEKFLVMEIY GLPEVNHIWA MTLNRMHIQN  420
STVATRMSNS ALWCLLAGAQ SNQLATPQCF VQMIQRHVKI NLHFIDGGVV PVPVAVIQVL  480
SRSSMSFKGI ELGSRPSSFL IFCSKCSLYD CTNEVKHSRR TKLRELRSGG RWKYNAIKSS  540
ELEGKKNVMP PPTYHVHHNR HVKLSPLLSP LLPLLSPLLP LLLPSPLLFP PPLWPPSLPP  600
SVPSLCNDHC HYHSSLSLSS SPPPFQLPSP STLPPHPPPL APPYPVIATT IATATPNHYY  660
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326RRSRLRK
2320327RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128180.0bud| cell culture| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9518770.0KC951877.1 Pyrus pyrifolia bZIP protein (bZIP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280818.10.0transcription factor HBP-1a
SwissprotQ501B21e-164BZP16_ARATH; bZIP transcription factor 16
TrEMBLD9ZIQ10.0D9ZIQ1_MALDO; BZIP domain class transcription factor
STRINGXP_008373530.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-158basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]