PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000184308
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 425aa    MW: 47504 Da    PI: 10.4631
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000184308genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.33.1e-23336386857
                    EEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
           WRKY   8 rKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                    rKYGqK++kgs++pr YYrC++  gCp+ k+ver+ +dp ++++tYe eH+
  MDP0000184308 336 RKYGQKPIKGSPYPRRYYRCSTVkGCPAXKHVERAPDDPAMLIVTYEREHH 386
                    9*******************9888***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.812336386IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-23336386IPR003657WRKY domain
SuperFamilySSF1182902.62E-19336386IPR003657WRKY domain
PfamPF031061.0E-19336386IPR003657WRKY domain
SMARTSM007741.8E-22336390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTRFKPIVQI QYHTQDRSPI TSSPPSREPK PTEKHMQQSY ILSMCMFVEP LLQLRASKIS  60
DSLEGKRFCR SVRKIRACVR VFGSSRRSST DLKAAYAASP DCRHRFRKSS TDSNEASFFA  120
IHSLCHSHNE SRKPYPPLLL YRAHLDGKIS TWGRKRKAEL SSQHLVFFIP LSSSVLRPKG  180
SAIRDPKAIL EDLSNKVKAL SESKEFAIKA TEAAKCQAKQ LEEANCGNLM GSDGAWKQDV  240
ESARAQYMGV ITELNSAKQE LQKIRQDCDA SLEAKATAIK QVAEAEDAAK ANAGRERRQR  300
RGSRPREGRL LQGQDVGRRI LANRRQDGRA SGGVGRKYGQ KPIKGSPYPR RYYRCSTVKG  360
CPAXKHVERA PDDPAMLIVT YEREHHTCSL IRGSPSSSAP PPCGGISNHM GAHKDDWIMT  420
LTQVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-143363852169WRKY transcription factor 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164999e-69bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9960685e-61KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-23WRKY DNA-binding protein 11