PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000183948
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 517aa    MW: 57994.8 Da    PI: 6.6582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000183948genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.2e-11324370455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  MDP0000183948 324 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVLYINQLK 370
                    799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-3922219IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.57E-13318374No hitNo description
PROSITE profilePS5088815.523320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16323387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16324385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEEIISSCSP PTFCQETSST FQQRLQFIVQ NRPEWWVYSI FWQASKVSIS DQVSLSWAGG  60
HFWNTHDHLA SKRSSGVINS YQPKFGFSNG ERSKVINQEV EALLHDDMVD LDMRLVDHED  120
ATDSEWFYFY TVSLTQSFSA GQGNNSKNIV GRAFGSGGFV WLAGDHDFQF YECERVKEAR  180
MHGIQTLVCI ATPCGVLELA SLDVIKEDWG LVHLSKSLFG SDGNINMNNK KKLSKQQTTR  240
DGNVLVPILE NGLFSAAQKE LIRQDHGGSI NEAAPINLGE SSPETPSDSV GNFTLENTEN  300
MNRLRKRGRS SNHGAASREL QLLNHVEAER QRREKLNHRF YVLRSVVPNV SKMDRSSLLA  360
DAVLYINQLK SKVEELEAKV QEQTQKPKAG NNASNNLDHH SSQSTSSIVD QHHYSYYNIS  420
NNSNSNNNSI SDRAAAAAVE VDVKIFGSDV IIRVQCPDQD YPYAKLMNAL KGLGLQVYHA  480
SIWSVKELMV QDVVARLPYG FTGKEALRNG IMKGWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-21112192192Transcription factor MYC3
4rqw_B1e-21112192192Transcription factor MYC3
4rs9_A1e-21112192192Transcription factor MYC3
4yz6_A1e-21112192192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309LRKRGRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269350.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370919.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498I7R10.0A0A498I7R1_MALDO; Uncharacterized protein
STRINGXP_008342536.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.17e-54bHLH family protein