PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000181024

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 196aa MW: 21724.7 Da PI: 8.9513

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000181024	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.9	9.8e-12	1	47	38	86
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 mre+gf rsp++C++kw+nl k++kk +++ k + + ++ ++y+++l+ MDP0000181024 1 MREKGFDRSPTMCTDKWRNLLKEFKKARHQVKIGVCSAK--MSYYEDLQ 47 89***************************99987665..999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-7	1	48	No hit	No description
Gene3D	G3DSA:3.40.50.1460	1.9E-15	124	177	IPR029030	Caspase-like domain
Pfam	PF00656	1.8E-16	127	171	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKIGVCSAKM SYYEDLQDLL RDRSTANSNH 60 NSVSAAAAVA TPPKLDSFVR FSDKANDRSV LNLERQLDHD GGDPLAITAA DAVAVNGKDR 120 NLEKMARKAV LIGCNYAGTK AELKGCINDV KRMYSCLVDR YGFSEDDIQI LSTPAPTPPP 180 PKPSENTPTL PPPYPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	6e-18	1	45	43	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15624	2e-77	fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341347.1	1e-59	trihelix transcription factor GT-4-like
Swissprot	Q9FX53	2e-34	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A314XQG2	3e-48	A0A314XQG2_PRUYE; Trihelix transcription factor GT-4-like
TrEMBL	M5X4Z8	1e-48	M5X4Z8_PRUPE; Uncharacterized protein
STRING	XP_008360158.1	8e-69	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	6e-40	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000181024

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]