PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000180376
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 596aa    MW: 65932.9 Da    PI: 9.0967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000180376genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12244289655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  MDP0000180376 244 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 289
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-16241304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-12242291No hitNo description
Gene3DG3DSA:4.10.280.107.3E-14243298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9244289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM001779.4E-4374554No hitNo description
Gene3DG3DSA:3.40.50.3007.7E-69382592IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525402.28E-56384556IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141934.07384592No hitNo description
CDDcd018681.39E-118386550No hitNo description
SMARTSM001733.5E-22386552No hitNo description
TIGRFAMsTIGR002312.0E-33388545IPR005225Small GTP-binding protein domain
SMARTSM001753.0E-102389552No hitNo description
PRINTSPR004493.7E-38389410No hitNo description
PfamPF000716.8E-59390550IPR001806Small GTPase superfamily
SMARTSM001743.6E-11391548No hitNo description
SMARTSM001763.3E-5394586No hitNo description
PRINTSPR004493.7E-38412428No hitNo description
PRINTSPR004493.7E-38430452No hitNo description
PRINTSPR004493.7E-38492505No hitNo description
PRINTSPR004493.7E-38527549No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0080092Biological Processregulation of pollen tube growth
GO:0045177Cellular Componentapical part of cell
GO:0070382Cellular Componentexocytic vesicle
GO:0090404Cellular Componentpollen tube tip
GO:0005525Molecular FunctionGTP binding
GO:0019900Molecular Functionkinase binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDSNTHQPNS GMLRFRSAPS SLLANLADGG DSGLHSKNPV EGSLESERLF SRFANYSHTN  60
DSDSWPSSFQ ELDDKSVVTV TKAAVPASRV SSQGGYSGML PPHYPRQSSF NGGYGLAGSG  120
AMEHHHTAAN KSLHSTSNLV RQSSSPAGLF SNTSVQNGFP IGNWNDSSNF PENLGGMKSD  180
QDHDGKLFSV DQSGELENRI HVLSHHLSLP KTSAEMAMEK FLQLQDSVPC KVRAKRGCAT  240
HPRSIAERVR RTRISERMRK LQELVPNMDK QTNTADMLDL AVDYIKDLQK QFKTLSDVRA  300
NCKCLNMQKQ KVARFSTTNV EGTRSCVLNK QLEFPIPRVI IVLRSFTRRT YYIGXQTYCG  360
VXNQSVWGPV AARMSNLYGD YNQKIDYVFK VVLIGDSAVG KTQLLARFAR NEFSVDSKAT  420
IGVEFQTKTL VLDHKTVKAQ IWDTAGQERY RAVTSAYYRG AVGAMLVYDM TKRQSFDHMA  480
RWLEELRGHA DKNIVIMLIG NKCDLGSLRA VPIEDAQEFA QRENLFFMET SALEATNVXT  540
AFLMILMEIY RIMSKKPLAA GDLNSGDSGL LKGTTIIVPG PDGDGARKGG CCFSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ojk_A9e-803865594177Ras-related protein Rab-11B
4ojk_B9e-803865594177Ras-related protein Rab-11B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.271721e-173leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392106.10.0transcription factor bHLH130-like
TrEMBLA0A498HZ330.0A0A498HZ33_MALDO; Uncharacterized protein
STRINGXP_008392106.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-96bHLH family protein