![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000179719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 572aa MW: 62538.8 Da PI: 5.2327 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.3e-29 | 281 | 339 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt gCpv+k+v+r++ed +++++tYeg+Hnh+ MDP0000179719 281 NDGCSWRKYGQKISKGNPCPRAYYRCTVVaGCPVRKQVQRCQEDMSILITTYEGTHNHP 339 8**************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-32 | 265 | 341 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-26 | 273 | 341 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.31 | 275 | 341 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-35 | 280 | 340 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-26 | 281 | 339 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 572 aa Download sequence Send to blast |
MGNGDKEKDL DVDLSLKIDA KEEKQEEGVG GEEEKEEEDA HRVNDGVEST AAEEKEDEQQ 60 PGVQNKRRKT TETGAGEVED DDVSVVETSV QENNMKTDQE VQLSVLQMEM SRMKEENEVL 120 RKVVEQTMKD YNDLQMKFTV LHQSCQNKDP QTFLSLAGND PNAVQGPRKI TKMSDIRHRS 180 PLLPKRDDES QLGLSLRLTS SATTASQLRG REEGEEDDDD KEEINNKEGL TRTTSLTSSS 240 VQLQNKLQRP ELAGTPSHGG SQPNRKARVS VRSRCESAAI NDGCSWRKYG QKISKGNPCP 300 RAYYRCTVVA GCPVRKQVQR CQEDMSILIT TYEGTHNHPL PVGATAMGAT AMASTAAAAA 360 SFMLLDSSNL HLADGTPSTY TQASLPYHHM MNMNPSSHSS SNLRSVDPHD PSKGLVLDLT 420 NNFYDTMGGS SSSIPPGFST NWLMSSTSSR SANYPSSTSL TNRLLDNGSR STRVALGDDQ 480 KGNWRSGEEN MSMAENVSAI ASDPKFRVAV AAAITSLINK DNHTTTSHPA PNAIAPRDHG 540 DNNGSSSTSN LWAIDEHFLS SNGKLIRKNT SE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 267 | 343 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008365288.1 | 0.0 | probable WRKY transcription factor 9 isoform X1 | ||||
TrEMBL | A0A498JG43 | 0.0 | A0A498JG43_MALDO; Uncharacterized protein | ||||
STRING | XP_008365288.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9320 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68150.1 | 5e-49 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000179719 |