PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000179306
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 543aa    MW: 59413.7 Da    PI: 7.0116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000179306genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-184491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l d+v+++G g+W+++ r  g++R++k+c++rw ++l
    MDP0000179306 44 KGPWTAAEDQILMDYVRKHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 91
                     79******************************************9986 PP
2Myb_DNA-binding47.63.8e-1597140146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+ l+++++ ++G++ W++ a+ ++ gRt++++k++w++
    MDP0000179306  97 KGSFSPDEERLILELHSKYGNK-WARMASQLP-GRTDNEIKNYWNT 140
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5263995IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-234094IPR009057Homeodomain-like
SuperFamilySSF466893.74E-3141138IPR009057Homeodomain-like
SMARTSM007174.8E-154393IPR001005SANT/Myb domain
PfamPF002496.9E-164491IPR001005SANT/Myb domain
CDDcd001672.25E-114691No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2595145IPR009057Homeodomain-like
SMARTSM007172.3E-1696144IPR001005SANT/Myb domain
PROSITE profilePS5129420.5396146IPR017930Myb domain
PfamPF002491.6E-1497140IPR001005SANT/Myb domain
CDDcd001679.05E-1299140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MTPNSNDSIN INGGSMLXSQ GLPESRGGDG GGGHVVEGRK GLKKGPWTAA EDQILMDYVR  60
KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLKKGSF SPDEERLILE LHSKYGNKWA  120
RMASQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPHDIKQS QHSYSHSHSH SQPTTTPQNS  180
LQPNTNNSPS PTFCFQIQSP TQTHHHHHIP PLSPTTPCLS PLSSPHQPKP TSXTSLPLFD  240
PTATASTSSF SSSTPSFTFH RPAPILGAPL RYKRCRDSVG YSPPISPTPQ RYTSILRTSS  300
MPDIASFQLT AAGTSTMPDI SSFQFPRTFN NPFPPMPPTQ FEYSDGLLSP SGSVYSVQSE  360
LPLNQVSQMH SEITIDANVS SAVAAEXVAD ENNSGNGLLE DMLQEAEALA RGGXGGGGNN  420
NSRMRGNGML GSFDEKQVSD DYGRWLQSTT SMASSLFEAK PIHDDHLNSM PEDLSKLFSF  480
IPSTEPVSDW YSDSGELSNG HSSGMTDTSL DFDMQHMASL FPITATGEHG RASSSWDNLP  540
GIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31381451107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385967.20.0transcription factor MYB120
TrEMBLA0A498IL280.0A0A498IL28_MALDO; Uncharacterized protein (Fragment)
STRINGXP_008385967.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-68myb domain protein 101