PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000179251

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 259aa MW: 29981.8 Da PI: 10.5164

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000179251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.4	1.7e-15	18	105	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk l ++ + + +p f+++ g+kk + l + sW+v++ r++ ++ + +++GWke vk + L++g+f+vF+++g++ f +vk MDP0000179251 18 FFKPL--TPGFQ-NGMAIPIAFTRSLGEKKL---DKALIKSCQGSWDVQV--RRTCDGvFCFKQGWKEVVKNHSLEVGEFLVFEHKGNMVF--NVK 103 55666..33455.55********987753...3455567888**..7777777*************************99999..666 PP EE CS B3 96 vf 97 v+ MDP0000179251 104 VY 105 64 PP
2	B3	36.6	8e-12	163	242	17	88
E--HHH.HTT---..--SEEEEEETTS-EEEEEE...........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy.........rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ++p +fa++ g+ ++ ++++d+ g+ W + + + ++++y+ +kGW eF kan+Lk+ D+++F+l++ + MDP0000179251 163 TIPLDFARSTGILDKS--CMRVKDPFGKLWPMDIGIvkdkekieaAWSRRTYLKSKGWIEFYKANKLKDADVCIFELIQVpK 242 89***999555434..49**********664655555532233348888*******************997643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.7E-19	15	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.011	15	108	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.61E-17	16	113	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.70E-14	16	105	No hit	No description
SMART	SM01019	4.4E-16	18	108	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-12	21	104	IPR003340	B3 DNA binding domain
SMART	SM01019	0.019	147	247	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.08	147	258	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-11	156	256	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-13	157	256	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.73E-10	163	256	No hit	No description
Pfam	PF02362	9.6E-10	163	243	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MADWSRFMAR SPPFPRKFFK PLTPGFQNGM AIPIAFTRSL GEKKLDKALI KSCQGSWDVQ 60 VRRTCDGVFC FKQGWKEVVK NHSLEVGEFL VFEHKGNMVF NVKVYEPLGC XKXFPPPSFR 120 LIMAKTHWNV KCPSAYSYWA YSRLRSFSFS PSQSCHIRLL VQTIPLDFAR STGILDKSCM 180 RVKDPFGKLW PMDIGIVKDK EKIEAAWSRR TYLKSKGWIE FYKANKLKDA DVCIFELIQV 240 PKSRSKPVIM NVKIFRFGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339373.3	1e-164	B3 domain-containing protein REM8-like
STRING	XP_008339373.1	1e-157	(Malus domestica)
STRING	XP_008368177.1	1e-157	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14574	9	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	1e-17	B3 family protein

Link Out ? help Back to Top
Phytozome	MDP0000179251