PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000179251
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 259aa    MW: 29981.8 Da    PI: 10.5164
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000179251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-1518105197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    ffk l     ++ + + +p  f+++ g+kk    +  l  +   sW+v++  r++ ++ + +++GWke vk + L++g+f+vF+++g++ f  +vk
  MDP0000179251  18 FFKPL--TPGFQ-NGMAIPIAFTRSLGEKKL---DKALIKSCQGSWDVQV--RRTCDGvFCFKQGWKEVVKNHSLEVGEFLVFEHKGNMVF--NVK 103
                    55666..33455.55**********987753...3455567888******..7777777***************************99999..666 PP

                    EE CS
             B3  96 vf 97 
                    v+
  MDP0000179251 104 VY 105
                    64 PP
2B336.68e-121632421788
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE...........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy.........rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                    ++p +fa++ g+  ++   ++++d+ g+ W + + +           ++++y+ +kGW eF kan+Lk+ D+++F+l++  +
  MDP0000179251 163 TIPLDFARSTGILDKS--CMRVKDPFGKLWPMDIGIvkdkekieaAWSRRTYLKSKGWIEFYKANKLKDADVCIFELIQVpK 242
                    89*****999555434..49**************664655555532233348888*********************997643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-1915108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.01115108IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-1716113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-1416105No hitNo description
SMARTSM010194.4E-1618108IPR003340B3 DNA binding domain
PfamPF023623.2E-1221104IPR003340B3 DNA binding domain
SMARTSM010190.019147247IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08147258IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-11156256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-13157256IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-10163256No hitNo description
PfamPF023629.6E-10163243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MADWSRFMAR SPPFPRKFFK PLTPGFQNGM AIPIAFTRSL GEKKLDKALI KSCQGSWDVQ  60
VRRTCDGVFC FKQGWKEVVK NHSLEVGEFL VFEHKGNMVF NVKVYEPLGC XKXFPPPSFR  120
LIMAKTHWNV KCPSAYSYWA YSRLRSFSFS PSQSCHIRLL VQTIPLDFAR STGILDKSCM  180
RVKDPFGKLW PMDIGIVKDK EKIEAAWSRR TYLKSKGWIE FYKANKLKDA DVCIFELIQV  240
PKSRSKPVIM NVKIFRFGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339373.31e-164B3 domain-containing protein REM8-like
STRINGXP_008339373.11e-157(Malus domestica)
STRINGXP_008368177.11e-157(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-17B3 family protein