PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000178636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 538aa MW: 59998 Da PI: 6.8501 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.6 | 0.00026 | 434 | 466 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq MDP0000178636 434 DRITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 466 6788888888887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.807 | 416 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-8 | 431 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-9 | 431 | 474 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.81E-4 | 434 | 470 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MAEECGVAIS SSSTQLTQQN WWDLVSSTNP WQQQQQQQQL NQKYSNSSNN NCDDVDQDVS 60 ISSTSFTNAS NHSSLSVDSS RRLLADQRSA SSNDDLINGE QVSDNHIWNH VLLSVNANHD 120 LRNNDHGVGE NFIDALPSKG LSTHHVMYDE PACDYLKKLD NNSTWEFTNS AASNFNNFEK 180 QINGGFMDNN MNISIENERL TKLSNLVSSW SIAPPEPQLV LNNFPPHQVM DHDHHYSQPN 240 LCHLKPQPFF NDSTSSCNPQ MGITNRNSAS SLFSCYRSQN MKVDDQNHGH PNGIEYQIGL 300 DNPMAADHHN SKYFNGNGSI LPDSYSSCTS TNAARNFADV ISFTSRLGNK PLNDLHAPKP 360 CFKSFNSSDH SKKQNLQTSS SARMSGGRGQ GIANEGKKKR TDDTSSETVV KKPKQETSTV 420 SSAKMQAPKV KLGDRITALQ QIVSPFGKTD TASVLYEAIQ YIKFLQEQVH VLLNSPYLKT 480 NSPKDPWAME RKDHKGDTKV DLKSKGLCLV PVSCTPQVYR ENTGSDYWTP TYRGSLYR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008389123.1 | 0.0 | transcription factor bHLH110-like | ||||
TrEMBL | A0A498I780 | 0.0 | A0A498I780_MALDO; Uncharacterized protein | ||||
STRING | XP_008389123.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10116 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 5e-56 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000178636 |