PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000176581
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 439aa    MW: 50237 Da    PI: 6.9547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000176581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-15541426100
                    ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
             B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    ++    k++++++pkkf+ ++g+    s  + l+ +sg +W v+l  r+ +g++++ +GW eF k   L+ g  +vF+++g+s+f  +v +f+ks
  MDP0000176581  54 KTLPIKKRKNMRIPKKFVMKYGEG--ISNPVCLKLPSGSEWIVEL--RRWDGEVWFDNGWPEFSKFYSLDCGHWLVFRYEGNSKF--NVCIFDKS 142
                    5666778999***********744..6667***************..999999****************************9999..****9985 PP
2B335.61.6e-113253991794
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     lp +f +   +k  +s + +l+ ++  +W v l+y   +++  +++GW e v++n+L++gD++vF  ++ ++ ++++
  MDP0000176581 325 FLPSDFHKLXHIK--KSCEXILQVSNVGTWPVDLNYFSEGKKAKFGRGWMEVVRDNNLESGDVCVFVSTN-NSPKPLF 399
                    6788887444555..445899999999*********88888899**********************9544.4444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.56249142IPR003340B3 DNA binding domain
SMARTSM010195.9E-1250142IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-2052143IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-1254141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-2055143IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-1560140No hitNo description
Gene3DG3DSA:2.40.330.107.0E-12254322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-12255322IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-10260405No hitNo description
PROSITE profilePS508636.569261321IPR003340B3 DNA binding domain
SMARTSM010190.0076262405IPR003340B3 DNA binding domain
PROSITE profilePS5086310.264324407IPR003340B3 DNA binding domain
PfamPF023621.5E-8324399IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-12324406IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-11326405IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MASSFQDYIS ADTKKLDPTE VCDEVNAIPD LSEEEQIKAC AWLIEDDKQF LMLKTLPIKK  60
RKNMRIPKKF VMKYGEGISN PVCLKLPSGS EWIVELRRWD GEVWFDNGWP EFSKFYSLDC  120
GHWLVFRYEG NSKFNVCIFD KSCTEIEYPL TMPKMELTSH DESRXNSAND SSDDYGDDXS  180
YKSGDGSDDN SAMILDKFLP CPRKTREKST LPYPQPHKKR ITSSSGKCDF PTEKYGVTXS  240
TXSGXVVALR RAIAFKSQNP SFIVVMRLSY IXSGXLWLPX KFCKLRPIKE SCEVILQVSX  300
GRTWTVDXRY EEGKATFRRG WMXIFLPSDF HKLXHIKKSC EXILQVSNVG TWPVDLNYFS  360
EGKKAKFGRG WMEVVRDNNL ESGDVCVFVS TNNSPKPLFD VVFFRSGQAA KRTNIDREKI  420
VPAEMEENVD AAGDSVQIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15261LKTLPIKKRK
2201207PRKTREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376478.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A498HUW00.0A0A498HUW0_MALDO; Uncharacterized protein
STRINGXP_009376478.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-28B3 family protein