PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000175835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 526aa MW: 57138.5 Da PI: 5.9771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 33 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++vk++G g+W+++ + g+ R++k+c++rw ++l MDP0000175835 33 KGPWTAAEDAILIEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 80 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.5e-15 | 86 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ ++eE++l++++++++G++ W++ a+ ++ gRt++++k++w++ MDP0000175835 86 KGSLSPEEEKLIIELHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 129 57789*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 27 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.755 | 28 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 30 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 32 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 33 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-12 | 35 | 80 | No hit | No description |
PROSITE profile | PS51294 | 24.818 | 81 | 135 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 84 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-15 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 86 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-11 | 90 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MMLNSGVMDG VHEAAVGAQR GGSHHHHQQS LKKGPWTAAE DAILIEYVKK HGEGNWNAVQ 60 KNSGLARCGK SCRLRWANHL RPNLKKGSLS PEEEKLIIEL HAKFGNKWAR MASQLPGRTD 120 NEIKNYWNTR MKRRQRAGLP IYPRDLQQEA PAAAFQHHHQ LRHSSSSSAS SFSSLLSSSQ 180 PREPNNFSPS QLSLYDHITS TFSSTSDHQN PNNNYFLQNH HHISYSLYSN PMTQFHGNGG 240 FATPLSPFSP FGSSSTSALF NQSNIPNQAL IGQYNSHGGF GGYNNLSPSS MIMGPPTYDP 300 TPLVQGSNPE LPSNQTLLSI NGLGEGQMGG SGYTAGEDHY DIAPVPSQGN SGLLDDVLVE 360 AQNKSNKKAK SGDSCSSGWS SKEKGLMVEE EEEEGEESAE EEAEDTAQVE SKSSGENSAD 420 NQRDGSSSPS AIGMKQNEDP LEDMDDDLLX LLNFPSAPAV SESWYVQGCM SNRASMSGVV 480 TSDNVSLEIQ QNAPLMTPSV KTNTAATSEV KRSLGSCYWN NMPGIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 31 | 134 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008379641.2 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | A0A498HG26 | 0.0 | A0A498HG26_MALDO; Uncharacterized protein | ||||
STRING | XP_008342013.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9949 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 3e-72 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000175835 |