PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000174095
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 952aa    MW: 103769 Da    PI: 7.0793
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000174095genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.91.3e-15496532339
            TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                    +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C+N 
  MDP0000174095 496 CKRCNCKKTKCLKLYCDCFAAGVYCAETCACQGCFNI 532
                    79**********************************6 PP
2TCR301e-09573595123
            TCR   1 kekkgCnCkkskClkkYCeCfaa 23 
                    ++k+gCnCkks ClkkYCeC++ 
  MDP0000174095 573 RHKRGCNCKKSMCLKKYCECYQV 595
                    589******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.4E-15494535IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163425.919495594IPR005172CRC domain
PfamPF036382.7E-11497531IPR005172CRC domain
SMARTSM011141.5E-8573643IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-6575596IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MDSPEIPKII ASTSPSSDSP PVQESPVFSY ISNLSPIQPV KASHAAQGFP GLSSPPLVFT  60
SPRINTLRET SFLKSFMIFI RPQYPQLSSA EKPKAQDEAK KFVDGPVDSK KHITQLQMGS  120
ITDSQDCETN SSSEGVDEYL ADPMEMDCTN SAQSVNPCLK ESKISYKSEA PSEQATEDLQ  180
GKQTFDAKPV KIKELSHGAL PSSERPKVGS GISVDNAFNG EYHHGLHNQD VIVGHVLTLY  240
PTXKSQGFGG XHQDDXDHSP QSPPGRLQIG QVYEDCTENV GGTSKGIIGN MILHAPNKVK  300
NDQGGMHRRC LQFEEAPPCA TGKRDSSSIE KVNDSEPPAS TAELEIVKVS YAATSKRQMG  360
ASLPPLYGGS SPLTVPKPSG IGLHLNSIVN AVPFVRGATT SIKLADHDIG LQVMKSSAVV  420
SHHLSENVRD DTETSSIAAS SSITQSPHTV EFEHLGSPLE ERKSDSQNVD SYKELNQSSS  480
QKKRKRTPSS KDSDGCKRCN CKKTKCLKLY CDCFAAGVYC AETCACQGCF NIPDYEDTVL  540
ETRQQIEARN PLAFAPKIVQ LEEEIQFTPA SARHKRGCNC KKSMCLKKYC ECYQVSNTYL  600
YFHVTVFVIF SFSIHPKCHF ILKANVGCSS GCRCDGCKNV YGRKGDYGPI DHGVTKDMIS  660
DKAGKETFDE KLEMVATKKD ALSTELYDSH NHTPLTPSFQ CSDXADNVPK SPCLLTSYLR  720
SPESDLTVIS SYEKSTRSSL RNSETSGILL ETSKELSGMG YYCWQEDYDN IGIADTFSPR  780
YDAAPIICHI TPLSDLCSKA SASSTSSRSD WKNASQVQLC PESQGLSSNS SLRWCSSPLT  840
PMTRLGGTEC SQGLDFDHGL SDIMQEEMPX ILKDISATNK SVKVSSPNKK RVSPPHNHNH  900
ELGASSSGSL RSGRKFILKA VPSFPPLTPC SSSKGSNTIQ STXNLHDKGR KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1449964014121Protein lin-54 homolog
5fd3_B4e-1449964014121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481486KKRKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378310.20.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A498J9900.0A0A498J990_MALDO; Uncharacterized protein
STRINGXP_008378310.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-55Tesmin/TSO1-like CXC domain-containing protein