PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000172885

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 254aa MW: 26458.7 Da PI: 7.4313

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000172885	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	72.8	5.5e-23	113	157	53	97
NF-YB 53 kcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +cqrekrktingddllwa++tlGfe+yveplk+yl+kyre+egek MDP0000172885 113 NCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEK 157 6******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-20	113	162	IPR009072	Histone-fold
SuperFamily	SSF47113	2.82E-16	113	169	IPR009072	Histone-fold
PRINTS	PR00615	6.0E-12	114	132	No hit	No description
PRINTS	PR00615	6.0E-12	133	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
LRVNSTSVRS KSHTLIQQRK XPHLTHTYRE TYGPEKSTFI FGFVITPPDP TDPNVSLSLP 60 PRPHDEAIRD SQPPETPGMA DSDNDSGGPN DVSHGQSGEL SAREQDRFLP IANCQREKRK 120 TINGDDLLWA MTTLGFEEYV EPLKIYLQKY REMEGEKSTM GGGGGGREKD SSSGGGGAAS 180 GGGGGGGISS GISGGGYNGG YGGMVMMGHH NHHQGHVRGS GGGYQQNHMA MGGGGGRKSG 240 GSSGGGNGGA SVVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	2e-16	100	152	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-16	100	152	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008357961.3	1e-109	nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A220D3B7	1e-108	A0A220D3B7_MALDO; Nuclear transcription factor Y subunit B-2-like
STRING	XP_008380004.1	1e-109	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-30	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	MDP0000172885