PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000171465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 32101 Da PI: 5.9413 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.2e-08 | 232 | 252 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +far G+Ck G++C+F H+ MDP0000171465 232 PCLYFAR-GYCKNGASCRFLHS 252 8******.*************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.507 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-4 | 229 | 253 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 230 | 252 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 231 | 252 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-6 | 232 | 252 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MDSYEATRIV FSRIQNLDPE NASKIMGLLL IQDHGEKEMI RLAFGPEAFL HSVILKSRKE 60 LGVSLSSNSP SXPSTPSXXP FTNPIAISRQ NSCSSSSRLS LTIPNLSSSS ASWAAISELR 120 TQEEINSFYG GSNGGVPADV MDEFQLQEQL SFLNDGCPPP MVGPKSPDFF YPQSNLSSSP 180 TTASDPNLFP SLHGSANWGG GGGGGGGPLH RRSCSVSDVC MEDPNSGFGW KPCLYFARGY 240 CKNGASCRFL HSGGLGDAVV DGGGQVVVGS PSKLEMMDHE XLLRSKTAQQ QRLAAASQLM 300 AA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354400.1 | 1e-169 | PREDICTED: zinc finger CCCH domain-containing protein 53 | ||||
TrEMBL | A0A498KAF3 | 1e-166 | A0A498KAF3_MALDO; Uncharacterized protein | ||||
STRING | XP_008349338.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008363326.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF669 | 6 | 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000171465 |