PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000170202
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 409aa    MW: 44370.5 Da    PI: 7.5325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000170202genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12174220455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  MDP0000170202 174 DHVLAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYVKHLQ 220
                    58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.37170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10175220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-13175221No hitNo description
SuperFamilySSF474592.88E-16175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEDPTFINQY EMSSLDYSFE ELIFPSLSSD SYCSNPNFTS KATAATHNFS KAFIENPHQT  60
GTQGRSAKQP KNTNSWKSCS TDHIIAAKAS SSSSSHLISF ENSDSSPPTT SQQYYGLDCK  120
VIKPKNEVEY SNGKLNPSAL ASQCSYDTQI CSPKHGQGIK RAATVTRSPL HAQDHVLAER  180
KRREKLSQRF IALSALIPGL KKMDKASVLG DAIKYVKHLQ ERTKVLEEQA AKKTGEAVVF  240
VKRMQYSADD DISSSDENSE SCSDQPLPEI EARVSDKEVL IRIHCEKTKG CLTSILSEIE  300
KLGLTIVHSC ALPFGNSTLD ITVVAQMDVE FRVAGKHLIK NLRHALFKLT FGGNTSHCTH  360
AASKALFCRR NGHGSGSGGN DTDGEGGDGD GSNNGGSMMV VTIVGCGSX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028954937.10.0transcription factor bHLH18-like isoform X2
TrEMBLA0A498HNU00.0A0A498HNU0_MALDO; Uncharacterized protein (Fragment)
STRINGXP_009347090.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-57bHLH family protein