PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000169102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 363aa MW: 39719.3 Da PI: 7.903 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00045 | 252 | 290 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq MDP0000169102 252 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 290 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.681 | 240 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-10 | 250 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.12E-6 | 250 | 294 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-7 | 254 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MNRGGCQSSP VQQMMAGNPN WWSINSMRPP STQPSMNISP FFHPPSPLPP NFLIPQFAPN 60 NNNNTSPPSS TISSSGLAIP SWHIENNNQE LPESWSQLLL GGLVGEDEKG VIMRQFHQAA 120 KKLENWEEQI LNSTQPPNAP AVDVKQENSG SSGGFMYGHH HHGNDHIQDF NPSAAALSSL 180 SQIMQSTTPS AASSPKSSCV TSFSNNNMLD FSSKSDVRHP PPHRSSDQCN NGGALKRARV 240 QPSSTPTTFK VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY 300 LGSGSGNMXQ QPQSVVQGER NCMFPEDPGQ LLNDNCMKRK GASEQTLIKR IVLLVWWQCS 360 AAY |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.11249 | 0.0 | bud| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028965996.1 | 0.0 | transcription factor bHLH68 isoform X3 | ||||
Swissprot | Q8S3D1 | 1e-65 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A498KEB5 | 0.0 | A0A498KEB5_MALDO; Uncharacterized protein | ||||
STRING | XP_009336860.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 7e-60 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000169102 |
Publications ? help Back to Top | |||
---|---|---|---|
|