PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000168773
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 330aa    MW: 36927.4 Da    PI: 6.013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000168773genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12127171554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    + +++r RR+++N++f++Lr l+P+      + ++Ka+i+  A+ YI++L
  MDP0000168773 127 NLAIDRVRRQQLNDKFFTLRNLIPNX-----TQNDKASIVGDAIGYINEL 171
                    45899********************9.....79**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.17E-11120175No hitNo description
PROSITE profilePS5088814.221122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14122189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12125180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9127171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MPNHDPLPPL PPPPPQPPQV LMDELSCHHH HHNHHSSMDI ELHNELGFNV DNPYNTTSGH  60
NDNGYTLPGS GNGSLFSSGG DEREGSGGGI YPDDGTITES FFEDGVMEFS REMGSIGRGR  120
NRKESKNLAI DRVRRQQLND KFFTLRNLIP NXTQNDKASI VGDAIGYINE LLRTVDELKL  180
LVEKKRCGRE RINRHKTEQD XGAAGDDESC NIKPXGEPHD QSYNNGSLRS SWLQRKSKYT  240
EVDIRIIEDE VTIKLVQRKK INLLLFVSRL LDELQLDLHH VAGGQIGNSY SFLFNTKMYE  300
GSCLYASAIA GKFIEVLDGQ YSAVPPTGSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302990.0bud| fruit
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017188288.20.0transcription factor bHLH10-like
SwissprotQ84TK11e-76BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A498JGJ30.0A0A498JGJ3_MALDO; Uncharacterized protein
STRINGXP_008378661.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]