PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000167950
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 102aa    MW: 12254.2 Da    PI: 10.8168
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000167950genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l + v+q+G g+W+  + ++ ++R++k+c+ rw++yl
    MDP0000167950 12 KGAWTKEEDHRLRHFVQQHGEGNWHQAPLKVDLNRCRKSCRRRWLNYL 59
                     79************************999999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.378163IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-191062IPR009057Homeodomain-like
SMARTSM007176.8E-111161IPR001005SANT/Myb domain
PfamPF002499.8E-151259IPR001005SANT/Myb domain
SuperFamilySSF466894.65E-201387IPR009057Homeodomain-like
CDDcd001671.01E-81459No hitNo description
Gene3DG3DSA:1.10.10.604.6E-46386IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MEEANSFGVV RKGAWTKEED HRLRHFVQQH GEGNWHQAPL KVDLNRCRKS CRRRWLNYLK  60
PSIKRGNFRE DEIDLMIRLR MLLGNRQACN ITYIFSLRII ST
Functional Description ? help Back to Top
Source Description
UniProtActivates DODA1 and CYP76AD1 in the betalain red pigment pathway. {ECO:0000305|PubMed:25436858}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: This recessive y allele is expressed at low levels, resulting in an inner white flesh of the beet. However, yy plants still can make pigments but never make as much of it or have it in the same location as YY or Yy plants with an inner red flesh. {ECO:0000305|PubMed:25436858}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021834840.12e-38transcription factor MYB90-like
SwissprotM1ETK39e-31MYB1W_BETVU; Transcription factor MYB1
TrEMBLA0A498I1H13e-64A0A498I1H1_MALDO; Uncharacterized protein
STRINGXP_008354581.16e-43(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-32myb domain protein 113
Publications ? help Back to Top
  1. Stracke R, et al.
    Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris).
    BMC Plant Biol., 2014. 14: p. 249
    [PMID:25249410]
  2. Hatlestad GJ, et al.
    The beet Y locus encodes an anthocyanin MYB-like protein that activates the betalain red pigment pathway.
    Nat. Genet., 2015. 47(1): p. 92-6
    [PMID:25436858]