PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000167824
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 87aa    MW: 9705.85 Da    PI: 11.0763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000167824genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.7e-0537741355
                   HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   R+++++    Lr ++P  +       ++ +++L +Av+Y+ksL+
  MDP0000167824 37 RQKMKKMVRALRGIVPGgN------EMNTVAVLDEAVQYLKSLK 74
                   7899999999999999955......8****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4992473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-53179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-83484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-93580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MMRKSXGLKT KKERLRSSLE KSSGXGSSSS CNSERKRQKM KKMVRALRGI VPGGNEMNTV  60
AVLDEAVQYL KSLKVELQKI GVENLNN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.59991e-133bud| flower| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7325203e-40KP732520.1 Morus alba basic helix-loop-helix 144-like protein transcript gene, complete cds, alternatively spliced.
GenBankKP7325213e-40KP732521.1 Morus alba basic helix-loop-helix 144-like protein transcript variant 1 mRNA, complete cds, alternatively spliced.
GenBankKP7325223e-40KP732522.1 Morus alba basic helix-loop-helix 144-like protein transcript variant 2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028966092.14e-44transcription factor bHLH144-like
RefseqXP_028966093.14e-44transcription factor bHLH144-like
RefseqXP_028966094.14e-44transcription factor bHLH144-like
RefseqXP_028966095.14e-44transcription factor bHLH144-like
TrEMBLA0A498IT811e-40A0A498IT81_MALDO; Uncharacterized protein
TrEMBLA0A498JZ442e-41A0A498JZ44_MALDO; Uncharacterized protein
STRINGXP_008356619.13e-49(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114111113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.27e-15bHLH family protein