PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000165802
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 875aa    MW: 99880 Da    PI: 8.3469
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000165802genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.7e-1097144255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++kGV   + +g W A+I+       +  r++lg+f +++eAa a++ a+ kl+g
  MDP0000165802  97 RFKGVVEQP-NGHWGAQIYA------NhERVWLGTFSSENEAAMAYDSAAIKLRG 144
                    789997566.8******999......44*************************98 PP
2B381.49e-26224314182
                    EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    f+k+ltpsdv+k++rlv+p + a+++         ++++ +s +l+++d   rsW+++++y+k+s+++v+tkGW++Fvk ++Lk++D+++F
  MDP0000165802 224 FQKELTPSDVGKLNRLVIPVSNAKRCfpsiseatsQKVESCSSQLVFYDNMMRSWTFRYCYWKSSRSFVFTKGWSRFVKTHHLKAKDILTF 314
                    99*******************************9999999**************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-2296154No hitNo description
Gene3DG3DSA:3.30.730.101.8E-1797152IPR001471AP2/ERF domain
SMARTSM003806.8E-2097158IPR001471AP2/ERF domain
PfamPF008476.7E-697144IPR001471AP2/ERF domain
PROSITE profilePS5103217.74197152IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1497153IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.108.1E-29221318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-24222317IPR015300DNA-binding pseudobarrel domain
CDDcd100179.47E-23223314No hitNo description
PROSITE profilePS5086311.223224339IPR003340B3 DNA binding domain
SMARTSM010191.1E-19224325IPR003340B3 DNA binding domain
PfamPF023624.3E-23224314IPR003340B3 DNA binding domain
SuperFamilySSF813838.37E-13472527IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.6E-7473517No hitNo description
PROSITE profilePS501818.915474520IPR001810F-box domain
PfamPF129371.1E-5477515IPR001810F-box domain
SMARTSM002560.0048480520IPR001810F-box domain
SuperFamilySSF813838.37E-13696720IPR001810F-box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MXHTLLANCL AMSATPSETK FSGFNSNPGF VVKSGGGKRK QELVLASGGA TDLLLPFICS  60
GLLVEXLXQK RYGRGHVKHG LKQRSEIWWA SRXVSKRFKG VVEQPNGHWG AQIYANHERV  120
WLGTFSSENE AAMAYDSAAI KLRGCDCHRN FPWTKFTFEE PHFQXQYSKE AVLRMIKDGS  180
YQAEFLEYRR SHAARESLRS DIQFGSLARV HNNGNGKMLN RLLFQKELTP SDVGKLNRLV  240
IPVSNAKRCF PSISEATSQK VESCSSQLVF YDNMMRSWTF RYCYWKSSRS FVFTKGWSRF  300
VKTHHLKAKD ILTFFQCQYK QLGDNGNKEP QTFYMVKVNW DGVESEDVSC LVENDAKNYQ  360
YDNCKLEAVS QNMNEAEGIL ADQKKRFRLF GVEICNEHPD TCPYKIFLST IGFRECNGTS  420
GTKQQLGKDP AAVQKHSHTQ QQHHLHRPSA SDDHIHHPKR HKIFSTPTAT RPSSRNIDDL  480
PESLLVEILC RLPCFKSVSQ CKLVSKRWCT LLSDPHFIRL FLCVQRNRKK KPTGSAISIQ  540
GEEFLSRVSP SSRPLAQLFK GLVSIHGLKQ EPIVVGAYND LVLCCASEYS QRDYYICNPH  600
TVQWVPLPPP PQVYGYKFRV VRLIDPRVDD DDDDDVVSCE IEAQIFFSET GEWREFVLSS  660
PSAIAVGDLC RESIGVASNK MXYWLGGXGE FLIGFDPFMI DNSDNTRTHY KCFFSECGEW  720
DSGLMDSLVT XDGRXXMCXY XSPTRTLSIW EVYEAKXGDQ TVMIHGGAGS LCVRRYKSVY  780
LGDEEMVVIS PNINHIRAVV FDPNXEDLVY LVIDSTRDWN KKDVIRCNTR TREMSKVSTN  840
QTICCLHLFP FVLPWWPTPV RQXPQRGEPR PNLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-232233267101B3 domain-containing transcription factor NGA1
5os9_B3e-232233267101B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-77RAV family protein