PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000159571
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 346aa    MW: 38487.9 Da    PI: 8.383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000159571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13168215355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L   ++YIk+Lq
  MDP0000159571 168 QDHIIAERKRREKLSQRFVALSALIPGL-----KKMDKASVLGDSIKYIKQLQ 215
                    5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-18169226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-13170219No hitNo description
SMARTSM003531.2E-14171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEISSRGGLS ELGMEDPFFI NQWQYMNSLD ELGMLPLAAA IGDNLQHSHF HPTFNLKTPI  60
DNSHTGIDRP AKQLKTDGWT SCKTDHLVLN PQVASSPNIL SFVNSNHGNQ MVVLKPKEEA  120
AAVCSKSTNT LPSDILLSQG SFGNQNCLFK ASQGTNRNST NPRLSATQDH IIAERKRREK  180
LSQRFVALSA LIPGLKKMDK ASVLGDSIKY IKQLQDKVKT LEEHTRNKNM ESVVFVKKTQ  240
LFANGDKTSS NENNSTGPFD ATLPEIEARF CDNNVLIRIH CEKRKGVVEK TISEVEKLQL  300
KFINSSVMTF GSCALDVTII AQMEAEFSLS VQDLVKNLRT AFNLFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-14169229869Transcription factor MYC2
5gnj_B9e-14169229869Transcription factor MYC2
5gnj_E9e-14169229869Transcription factor MYC2
5gnj_F9e-14169229869Transcription factor MYC2
5gnj_G9e-14169229869Transcription factor MYC2
5gnj_I9e-14169229869Transcription factor MYC2
5gnj_M9e-14169229869Transcription factor MYC2
5gnj_N9e-14169229869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERKRRE
2174179RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965545.10.0transcription factor bHLH18-like
RefseqXP_028965546.10.0transcription factor bHLH18-like
RefseqXP_028965547.10.0transcription factor bHLH18-like
RefseqXP_028965548.10.0transcription factor bHLH18-like
SwissprotQ9T0723e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A498IW180.0A0A498IW18_MALDO; Uncharacterized protein
STRINGXP_009346450.10.0(Pyrus x bretschneideri)
STRINGXP_009346456.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-63bHLH family protein