PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000159062

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 203aa MW: 23116.2 Da PI: 9.6541

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000159062	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.7	5.5e-17	11	50	2	41
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ie++ r v+fskRr ++K A+EL+++C+++v+++ifs MDP0000159062 11 LIESQHARXVSFSKRRSSLFKNASELCTMCAVQVLLVIFS 50 59*************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.2E-18	2	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.708	2	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-23	3	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-11	4	24	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-17	12	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-11	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-11	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MRGRKKIQME LIESQHARXV SFSKRRSSLF KNASELCTMC AVQVLLVIFS LGRKPFSFGH 60 PSVHSVLNRF HQFQNPDAST NQNEATKEPV MQGLNDSFSH LLEQVKFEQK RGKKLNRKIM 120 EHSGPDWLKA PMDSLNLEEL RKVKETLVDV KKKIKKQGDE LLAEPLASSA NNSIELFHCP 180 ETNLVGDISS VHPQGSLTFR EEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028954309.1	1e-148	agamous-like MADS-box protein AGL29
TrEMBL	A0A314YUF0	3e-57	A0A314YUF0_PRUYE; Agamous-like MADS-box protein AGL61
STRING	XP_009375893.1	1e-135	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20409	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	6e-34	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	MDP0000159062