PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000153589

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

RAV

Protein Properties

Length: 311aa MW: 35395.3 Da PI: 9.2179

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000153589	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.3	2.9e-11	31	79	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ykGV ++grW A+I++ + r++lg+f+ +eeAak + a +k++g MDP0000153589 31 SSYKGVV-PQSNGRWGAQIYEK-----SHRVWLGTFDDEEEAAKTYNIASLKFRG 79 679*7.7779*****4.....6*****************99999987 PP
2	B3	91	9e-29	165	267	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kv tpsdv++++r+v+pk++ae+h g +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++ ++ MDP0000153589 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDELGNVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKAGDVVRFERSVGED 258 89**********************88887652..237899**********************************************886688 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++l++ + MDP0000153589 259 KKLFIDCRP 267 888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.03E-15	31	88	IPR016177	DNA-binding domain
CDD	cd00018	5.48E-22	31	86	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.5E-17	32	87	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-20	32	93	IPR001471	AP2/ERF domain
Pfam	PF00847	7.7E-5	32	79	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.019	32	87	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	7.8E-35	158	269	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.53E-27	162	265	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.59E-26	164	263	No hit	No description
SMART	SM01019	7.8E-21	165	269	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.183	165	269	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-26	165	268	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDLMSCWNRS TRDYSTVIGA KAASSNKLPS SSYKGVVPQS NGRWGAQIYE KSHRVWLGTF 60 DDEEEAAKTY NIASLKFRGL DAITNFSPNQ MTPYERDVTE ALFLESHSKA EIVDMLRKHS 120 YANELEMYKH KLYNGGALGL DAGGKRMKCH LDLMDTCSSE RELLFEKVAT PSDVGRLNRM 180 VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE LGNVWRFGYC YWSSSQSYVL SKGWIRFVKE 240 KKLKAGDVVR FERSVGEDKK LFIDCRPRNV DVSGIREMHG RVGQPLGTAQ DDGMVRLFGV 300 NIQPSTWPRY Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	4e-43	162	274	11	126	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269\|PubMed:18718758, ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008379887.1	0.0	AP2/ERF and B3 domain-containing transcription repressor RAV2-like
Swissprot	P82280	3e-97	RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBL	A0A498J219	0.0	A0A498J219_MALDO; Uncharacterized protein
STRING	XP_008379887.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2920	32	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-99	related to ABI3/VP1 2

Link Out ? help Back to Top
Phytozome	MDP0000153589

Publications ? help Back to Top
Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Marín-González E, et al. SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] Sun YW, et al. Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus. Sci Rep, 2015. 5: p. 16476 [PMID:26602265] Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] Matías-Hernández L, et al. TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039] Li P, et al. The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses. Physiol Plant, 2017. 159(4): p. 416-432 [PMID:27747895]