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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000153589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | RAV | ||||||||
Protein Properties | Length: 311aa MW: 35395.3 Da PI: 9.2179 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.3 | 2.9e-11 | 31 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ykGV ++grW A+I++ + r++lg+f+ +eeAak + a +k++g MDP0000153589 31 SSYKGVV-PQSNGRWGAQIYEK-----SHRVWLGTFDDEEEAAKTYNIASLKFRG 79 679***7.7779*********4.....6*******************99999987 PP | |||||||
2 | B3 | 91 | 9e-29 | 165 | 267 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kv tpsdv++++r+v+pk++ae+h g +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++ ++ MDP0000153589 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDELGNVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKAGDVVRFERSVGED 258 89************************88887652..237899************************************************886688 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++l++ + MDP0000153589 259 KKLFIDCRP 267 888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-15 | 31 | 88 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.48E-22 | 31 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-17 | 32 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-20 | 32 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-5 | 32 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.019 | 32 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-35 | 158 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-27 | 162 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.59E-26 | 164 | 263 | No hit | No description |
SMART | SM01019 | 7.8E-21 | 165 | 269 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 165 | 269 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-26 | 165 | 268 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDLMSCWNRS TRDYSTVIGA KAASSNKLPS SSYKGVVPQS NGRWGAQIYE KSHRVWLGTF 60 DDEEEAAKTY NIASLKFRGL DAITNFSPNQ MTPYERDVTE ALFLESHSKA EIVDMLRKHS 120 YANELEMYKH KLYNGGALGL DAGGKRMKCH LDLMDTCSSE RELLFEKVAT PSDVGRLNRM 180 VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE LGNVWRFGYC YWSSSQSYVL SKGWIRFVKE 240 KKLKAGDVVR FERSVGEDKK LFIDCRPRNV DVSGIREMHG RVGQPLGTAQ DDGMVRLFGV 300 NIQPSTWPRY Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-43 | 162 | 274 | 11 | 126 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008379887.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | P82280 | 3e-97 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A498J219 | 0.0 | A0A498J219_MALDO; Uncharacterized protein | ||||
STRING | XP_008379887.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-99 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000153589 |