PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000153000

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 303aa MW: 33727.8 Da PI: 6.3979

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000153000	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00065	253	289	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ Lr ++P + ++ +++L +Av+Y+ksL MDP0000153000 253 RQKMKKMVRALRGIVPGgN------EMNTVAVLDEAVQYLKSL 289 7999999999***9955......8*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.461	240	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-5	247	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.70E-6	249	294	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-7	251	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-8	251	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MYFGFALLFW SHSNNAALWI NCCRVRMNIG VNVKKYRAIK EVGKILMSVG VIAYFHQMQV 60 CQSGQQFDPN KAAPPFANQV GNNYMHIPVA SAYGAVLPNE ANLFKPFHGV EFQTSSICPK 120 NFIIFDQTDH RSQIMFNPEI AHKITGPAFN LCAAYIQDNL GLNEGNNDNR EASSTLKEDS 180 DDIDALLSLD EEELEDYDEE EVSTARTHGN YGSSFSDSCS SNGLKXKKER LRSSLEKSSG 240 IGSSSSCNSE RKRQKMKKMV RALRGIVPGG NEMNTVAVLD EAVQYLKSLK VELQKIGVEN 300 LND

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5999	0.0	bud\| flower\| fruit\| leaf\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028958925.1	1e-179	transcription factor bHLH144-like
Refseq	XP_028958926.1	1e-179	transcription factor bHLH144-like
Refseq	XP_028958927.1	1e-179	transcription factor bHLH144-like
Refseq	XP_028958928.1	1e-179	transcription factor bHLH144-like
Swissprot	Q9ASX9	2e-48	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A498IT81	1e-165	A0A498IT81_MALDO; Uncharacterized protein
STRING	XP_009360862.1	1e-140	(Pyrus x bretschneideri)
STRING	XP_008383502.1	1e-140	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11411	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	2e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000153000

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]