PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000153000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 33727.8 Da PI: 6.3979 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00065 | 253 | 289 | 13 | 54 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ Lr ++P + ++ +++L +Av+Y+ksL MDP0000153000 253 RQKMKKMVRALRGIVPGgN------EMNTVAVLDEAVQYLKSL 289 7999999999*****9955......8***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.461 | 240 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-5 | 247 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.70E-6 | 249 | 294 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-7 | 251 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-8 | 251 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MYFGFALLFW SHSNNAALWI NCCRVRMNIG VNVKKYRAIK EVGKILMSVG VIAYFHQMQV 60 CQSGQQFDPN KAAPPFANQV GNNYMHIPVA SAYGAVLPNE ANLFKPFHGV EFQTSSICPK 120 NFIIFDQTDH RSQIMFNPEI AHKITGPAFN LCAAYIQDNL GLNEGNNDNR EASSTLKEDS 180 DDIDALLSLD EEELEDYDEE EVSTARTHGN YGSSFSDSCS SNGLKXKKER LRSSLEKSSG 240 IGSSSSCNSE RKRQKMKKMV RALRGIVPGG NEMNTVAVLD EAVQYLKSLK VELQKIGVEN 300 LND |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.5999 | 0.0 | bud| flower| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028958925.1 | 1e-179 | transcription factor bHLH144-like | ||||
Refseq | XP_028958926.1 | 1e-179 | transcription factor bHLH144-like | ||||
Refseq | XP_028958927.1 | 1e-179 | transcription factor bHLH144-like | ||||
Refseq | XP_028958928.1 | 1e-179 | transcription factor bHLH144-like | ||||
Swissprot | Q9ASX9 | 2e-48 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | A0A498IT81 | 1e-165 | A0A498IT81_MALDO; Uncharacterized protein | ||||
STRING | XP_009360862.1 | 1e-140 | (Pyrus x bretschneideri) | ||||
STRING | XP_008383502.1 | 1e-140 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11411 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000153000 |
Publications ? help Back to Top | |||
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