PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000152718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 18221.5 Da PI: 10.1448 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.4 | 3.8e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++ r+vtf kR+ng++KK ELS+LC+++v+ i++s+ MDP0000152718 11 IRDDVSRKVTFKKRKNGLMKKVRELSILCGIDVSAIVYSQ 50 88999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.105 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-23 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.61E-23 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 7.1E-13 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-18 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-13 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-13 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MTRKKXKLAY IRDDVSRKVT FKKRKNGLMK KVRELSILCG IDVSAIVYSQ YDTKPDVGSC 60 RDVARRIVTR FKQMPERDKS KNMLNQESFL RQQILKAEEQ LKKQIKENQE KEIMVQSMRG 120 SLPADWLQXL SGTDLNGLLL SIEKNIEAIE EEMQEX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKXKLAYIRDDVSRKVTFKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008343298.2 | 1e-107 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-32 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A498JCJ7 | 1e-105 | A0A498JCJ7_MALDO; Uncharacterized protein | ||||
STRING | XP_008343298.1 | 1e-107 | (Malus domestica) | ||||
STRING | XP_008362583.1 | 1e-107 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17823 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-29 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000152718 |
Publications ? help Back to Top | |||
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