PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000150696

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 981aa MW: 111125 Da PI: 6.711

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000150696	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.1e-17	62	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GFs ++ +s++sk +g+++ r+fvC +eg ++++ ++ C+a+l++++++++kw+ tk+++eH+H+l+ MDP0000150696 62 FYDEYARRLGFSSKVGQSSRSKPDGTTIAREFVCGREGLKRRHADS--------------CDAMLRIELKDQDKWVSTKFVKEHSHALV 136 9************************************9998777..............*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-14	62	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-30	277	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.93	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-10	561	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MDVEVVDVEG MVHCGMADDG DAEQSEGVEV NNGKNSEAHD EDGISEPYVG MEFTSEEAGK 60 TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCDA MLRIELKDQD 120 KWVSTKFVKE HSHALVNPAK MQYIRPRRHF AGAAKNAAET YQGVGIVPSG VMYVSMDGNH 180 GNHTIVEKNR VVRNTSSAES NRPIKNAVTV DHALRPSSRR RTLGKDAQNL LEYFKKMQAE 240 NPGFFYAIQL DEDNHMANVF WADARSRTAY CHFGDSVTLD TTYRVNQYRV PFAPFTGVNH 300 HGQMVLFGCA LLLDESEASF IWLFKTFLTA MNDCSPVSIM TDQDRTIQTA VSQVFPEVRH 360 CISKWHVLRE GQDRLAHVCH AHPNFQLELY NCINLTETVE EFELSWDSIL DKYDLRRNDW 420 IESLYHARAQ WVPVYFRDSF FAAISPNQGY DGSFFEGYVN QQTTLPLFFR QYERALENWF 480 EREIEADFDT ICTTPVLRTP SPMEKQAANL YTRKIFSKFQ EELVETFVYT ANRIEGDGAI 540 STFRVAKFED DSKAYIVTFN YPEMRANCSC QMFEYSGILC RHVLTVFTVT NVLTLPSYYI 600 LKRWTRNAKN GTNPDEHSGK LHGQESLTLR YNNLCREAIK YAEDGATTTE TFIAAMTALK 660 DGGKKVSVVK KNVAKVAPPS SQSNVTGYDD KKNSTSTSDM TPLLWPHHDE VMRRFNLNDA 720 GAPAQNVSDL NFPRMAPVSL HRDDGTPENM VVLPCLKSMT WVMENKNSTP GNRVAVINLK 780 LQDYSRIPST ESEVKFQLSR VSLEPMLRSM SYISDQLSTP ANKVAVINLK VWSQSFKPIS 840 PKFANGVSTW KHPFIAGSSA SGIMVTLLLS RRTNVALLFL ALEGCIFFFK SIAGSLGSYS 900 ALLIHDSHSV FYQKNNVKMH NLYLFLQLQD TETTSGESEV KFQVSRDTLG AMLRSMAYIR 960 EQLSTARREN ETIRSGYDGY E

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MDVEVVDVEG MVHCGMADDG DAEQSEGVEV NNGKNSEAHD EDGISEPYVG MEFTSEEAGK  60
TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCDA MLRIELKDQD  120
KWVSTKFVKE HSHALVNPAK MQYIRPRRHF AGAAKNAAET YQGVGIVPSG VMYVSMDGNH  180
GNHTIVEKNR VVRNTSSAES NRPIKNAVTV DHALRPSSRR RTLGKDAQNL LEYFKKMQAE  240
NPGFFYAIQL DEDNHMANVF WADARSRTAY CHFGDSVTLD TTYRVNQYRV PFAPFTGVNH  300
HGQMVLFGCA LLLDESEASF IWLFKTFLTA MNDCSPVSIM TDQDRTIQTA VSQVFPEVRH  360
CISKWHVLRE GQDRLAHVCH AHPNFQLELY NCINLTETVE EFELSWDSIL DKYDLRRNDW  420
IESLYHARAQ WVPVYFRDSF FAAISPNQGY DGSFFEGYVN QQTTLPLFFR QYERALENWF  480
EREIEADFDT ICTTPVLRTP SPMEKQAANL YTRKIFSKFQ EELVETFVYT ANRIEGDGAI  540
STFRVAKFED DSKAYIVTFN YPEMRANCSC QMFEYSGILC RHVLTVFTVT NVLTLPSYYI  600
LKRWTRNAKN GTNPDEHSGK LHGQESLTLR YNNLCREAIK YAEDGATTTE TFIAAMTALK  660
DGGKKVSVVK KNVAKVAPPS SQSNVTGYDD KKNSTSTSDM TPLLWPHHDE VMRRFNLNDA  720
GAPAQNVSDL NFPRMAPVSL HRDDGTPENM VVLPCLKSMT WVMENKNSTP GNRVAVINLK  780
LQDYSRIPST ESEVKFQLSR VSLEPMLRSM SYISDQLSTP ANKVAVINLK VWSQSFKPIS  840
PKFANGVSTW KHPFIAGSSA SGIMVTLLLS RRTNVALLFL ALEGCIFFFK SIAGSLGSYS  900
ALLIHDSHSV FYQKNNVKMH NLYLFLQLQD TETTSGESEV KFQVSRDTLG AMLRSMAYIR  960
EQLSTARREN ETIRSGYDGY E

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7826	3e-61	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028951230.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_028951231.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	M5WT85	0.0	M5WT85_PRUPE; Uncharacterized protein
STRING	XP_009362868.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	MDP0000150696

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]