PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000149037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | FAR1 | ||||||||
Protein Properties | Length: 229aa MW: 26031.2 Da PI: 8.9028 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.7 | 4.6e-29 | 62 | 150 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r++ +++sk++g+++ rt+vC+keg+r++++++ +k+ ++r++tr+gC+a+l vkk + gkw+v+ +++eH+H+l+p MDP0000149037 62 FYNAYATRMGFVTRMNDMYRSKHDGTVIGRTLVCNKEGFRKPDRRD-KKTLKPRTQTRVGCRAMLSVKKLSVGKWVVKWFVKEHTHALTP 150 *******************************************999.99**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-26 | 62 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MIHESDGASV GTSLVDMSHL FGQDHDDDQR TRNSCKDGSS LVQPHEPYVG QEFDSQESAL 60 AFYNAYATRM GFVTRMNDMY RSKHDGTVIG RTLVCNKEGF RKPDRRDKKT LKPRTQTRVG 120 CRAMLSVKKL SVGKWVVKWF VKEHTHALTP NKAAKGLVDD QVPDDKTKIA ELTNXLFLER 180 KRSAALREIV DLLFNHIEEH TQDLSKKLQH VVDNVKELES EGKNCRSLG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11058 | 0.0 | bud| flower| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008355862.2 | 1e-171 | protein FAR1-RELATED SEQUENCE 12-like isoform X1 | ||||
TrEMBL | A0A498KA83 | 1e-165 | A0A498KA83_MALDO; Uncharacterized protein | ||||
STRING | XP_008355862.1 | 1e-171 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 8e-69 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000149037 |