PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000146760

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 304aa MW: 33534.6 Da PI: 8.7946

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000146760	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	165.9	5e-52	115	209	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr++Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre e+ MDP0000146760 115 VREQDRYMPIANVIRIMRRILPPHAKISDDAKETMQECVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLQRYRESES 209 69******************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.3E-50	112	221	IPR009072	Histone-fold
SuperFamily	SSF47113	1.06E-37	118	220	IPR009072	Histone-fold
Pfam	PF00808	6.8E-25	121	185	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.8E-16	149	167	No hit	No description
PRINTS	PR00615	5.8E-16	168	186	No hit	No description
PRINTS	PR00615	5.8E-16	187	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MERMGGGLPP RHAKSSNPGS QMYFFPKNLS SYKAIYHHMK NLEELIGFQA GKRVLNSGRG 60 IRFKRGHVHN YILSVPSANS NSSDGGNAIA NTSNPANPAG NSDNNTVQRA PQCLVREQDR 120 YMPIANVIRI MRRILPPHAK ISDDAKETMQ ECVSEYIAFI TGEANERCQR EQRKTVTAED 180 VLWAMGKLGF DNYVEPLTIY LQRYRESESS DRSQFVKREE RQSMDYCPPG HAGPQVAMMP 240 PPPPSYGPGY YFGPQHGPPM YDPSMMGMFR DGSSSGAGGG GSSSASGAQG ENSLGEFNPF 300 GHFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-58	115	206	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028945335.1	1e-134	nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A498IKH1	1e-167	A0A498IKH1_MALDO; Uncharacterized protein
STRING	XP_008339495.1	1e-168	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	4e-60	NF-YB family protein

Link Out ? help Back to Top
Phytozome	MDP0000146760